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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 181ChIP-seq
  • 89total RNA-seq
  • 5ATAC-seq
  • 4DNase-seq
  • 2WGBS
  • 1FAIRE-seq
Assay category
  • 181DNA binding
  • 89Transcription
  • 10DNA accessibility
  • 2DNA methylation
Target of assay
  • 103histone modification
  • 102histone
  • 52narrow histone mark
  • 49broad histone mark
  • 47transcription factor
  • 31control
  • 8RNA binding protein
  • 3chromatin remodeller
Date released
  • 572February, 2021
  • 392November, 2017
  • 283May, 2020
  • 282August, 2017
  • 277May, 2021
  • 250October, 2019
  • 218June, 2019
  • 164July, 2018
  • 120May, 2019
  • 94December, 2017
  • 87November, 2018
  • 82July, 2019
  • 79April, 2019
  • 76October, 2018
  • 72September, 2018
  • 59November, 2019
  • 49April, 2018
  • 49August, 2021
  • 39February, 2018
  • 34December, 2018
  • 30January, 2019
  • 24May, 2022
  • 16March, 2020
  • 15October, 2017
  • 11September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 287fastq
  • 282bam
  • 272bigWig
  • 142bed narrowPeak
  • 89tsv
  • 85tagAlign
  • 42bigBed narrowPeak
  • 41bed broadPeak
  • 33bed bed3+
  • 15bigBed broadPeak
  • 6bed bedMethyl
  • 6bigBed bedMethyl
Organism
  • 275Homo sapiens
Biosample type
  • 170tissue
  • 58primary cell
  • 54in vitro differentiated cells
Organ
  • 168pancreas
  • 71connective tissue
  • 29epithelium
  • 26liver
  • 17adipose tissue
Project
  • 282AMP
Genome assembly (visualization)
  • 252hg19
  • 249GRCh38
Lab
  • 282AMP-T2D consortium
Audit category:
  • 39missing controlled_by
Audit category:
  • 16inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

282 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans228911
liver25
pancreas14
white adipose tissue12
adipose tissue22
primary cell
skeletal muscle myoblast152
pancreatic alpha cell131
pancreatic beta cell131
pancreatic endocrine cell12
pancreatic acinar cell1
in vitro differentiated cells
adipocyte531
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