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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
total RNA-seq
74
ChIP-seq
45
ATAC-seq
Assay category
203
Transcription
74
DNA binding
45
DNA accessibility
Target of assay
43
histone
43
histone modification
35
narrow histone mark
31
control
8
broad histone mark
Date released
572
February, 2021
392
November, 2017
283
May, 2020
282
August, 2017
277
May, 2021
250
October, 2019
218
June, 2019
164
July, 2018
120
May, 2019
94
December, 2017
87
November, 2018
82
July, 2019
79
April, 2019
76
October, 2018
72
September, 2018
59
November, 2019
49
April, 2018
49
August, 2021
39
February, 2018
34
December, 2018
30
January, 2019
24
May, 2022
16
March, 2020
15
October, 2017
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
322
bam
291
bigWig
204
tsv
50
tagAlign
43
bed narrowPeak
39
fastq
Organism
322
Homo sapiens
Biosample type
193
tissue
90
primary cell
39
in vitro differentiated cells
Organ
193
liver
13
embryo
Project
277
AMP
45
T1D
Genome assembly (visualization)
291
hg19
238
GRCh38
Lab
277
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
2
inconsistent control read length
month_released!
October, 2022
BIOSAMPLE
ASSAY
322 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
tissue
liver
143
50
primary cell
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
T follicular helper cell
2
2
T-helper 1 cell
2
2
T-helper 17 cell
2
2
+ See 20 more…
in vitro differentiated cells
pancreatic endoderm
4
9
definitive endodermal cell
2
3
embryonic stem cell
2
3
endocrine cell
2
3
posterior foregut
2
3
+ See 2 more…
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