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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
total RNA-seq
18
small RNA-seq
9
WGBS
6
ATAC-seq
3
ChIP-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
78
Transcription
9
DNA methylation
8
DNA accessibility
3
DNA binding
Target of assay
3
control
3
histone
3
histone modification
3
narrow histone mark
Date released
572
February, 2021
392
November, 2017
283
May, 2020
282
August, 2017
277
May, 2021
250
October, 2019
218
June, 2019
164
July, 2018
120
May, 2019
94
December, 2017
87
November, 2018
82
July, 2019
79
April, 2019
76
October, 2018
72
September, 2018
59
November, 2019
49
April, 2018
49
August, 2021
39
February, 2018
34
December, 2018
30
January, 2019
24
May, 2022
16
March, 2020
15
October, 2017
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
0
February, 2023
Available data
126
tsv
108
bigWig
98
bam
76
fastq
75
bed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
12
bedpe bed3+
10
bed bed3
10
hic
8
bed bed3+
7
txt
4
hdf5
3
bed bedgraph
2
bigBed narrowPeak
2
ibed
Organism
98
Homo sapiens
Biosample type
73
tissue
18
primary cell
5
cell line
2
in vitro differentiated cells
Organ
23
heart
16
connective tissue
13
brain
12
adipose tissue
10
blood vessel
10
pancreas
10
vasculature
8
epithelium
8
liver
7
kidney
7
musculature of body
3
artery
1
limb
1
pericardium
Project
93
AMP
5
T1D
Genome assembly (visualization)
95
GRCh38
88
hg19
Lab
98
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
BIOSAMPLE
ASSAY
98 results
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total RNA-seq
small RNA-seq
WGBS
ATAC-seq
ChIP-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
3
2
2
omental fat pad
4
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
heart
2
1
1
+ See 24 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
cardiac atrium fibroblast
1
+ See 10 more…
cell line
EndoC_BH1
2
1
early embryonic cell
2
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
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