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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
DNase-seq
40
total RNA-seq
31
ChIP-seq
15
small RNA-seq
9
WGBS
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
193
DNA accessibility
58
Transcription
31
DNA binding
9
DNA methylation
Target of assay
19
histone
19
histone modification
11
control
11
narrow histone mark
8
broad histone mark
4
RNA binding protein
4
transcription factor
Date released
571
February, 2021
277
May, 2021
256
August, 2017
243
October, 2019
216
June, 2019
164
July, 2018
120
May, 2019
90
May, 2020
79
April, 2019
78
November, 2017
76
October, 2018
75
July, 2019
72
September, 2018
59
November, 2019
49
April, 2018
45
August, 2021
39
February, 2018
34
December, 2018
34
November, 2018
31
December, 2017
25
January, 2019
24
May, 2022
15
March, 2020
15
October, 2017
11
September, 2017
6
November, 2020
3
August, 2018
3
June, 2018
1
March, 2019
Available data
291
bam
285
bigWig
215
bed narrowPeak
210
bigBed narrowPeak
188
bed bed3+
185
bed broadPeak
185
bigBed broadPeak
58
tsv
22
bed bedMethyl
22
bigBed bedMethyl
3
hdf5
Organism
291
Homo sapiens
Biosample type
220
tissue
71
primary cell
Organ
88
kidney
56
heart
48
musculature of body
43
brain
34
connective tissue
33
limb
25
epithelium
18
ureter
16
vasculature
14
blood vessel
13
adipose tissue
liver
8
pancreas
7
eye
5
artery
1
pericardium
Project
291
AMP
Genome assembly (visualization)
280
GRCh38
250
hg19
Lab
291
AMP-T2D consortium
Audit category:
26
inconsistent ontology term
organ_slims!
liver
BIOSAMPLE
ASSAY
291 results
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DNase-seq
total RNA-seq
ChIP-seq
small RNA-seq
WGBS
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart
18
2
1
1
muscle of arm
17
kidney
13
1
muscle of leg
13
1
brain
12
+ See 45 more…
primary cell
skeletal muscle satellite cell
1
8
1
cardiac fibroblast
3
5
mesenchymal stem cell
7
epithelial cell of proximal tubule
1
1
3
cardiac muscle cell
1
3
+ See 25 more…
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