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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
ChIP-seq
190
total RNA-seq
45
ATAC-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
Assay category
191
DNA binding
190
Transcription
55
DNA accessibility
7
DNA methylation
Target of assay
79
transcription factor
58
control
57
histone
57
histone modification
38
narrow histone mark
32
RNA binding protein
19
broad histone mark
16
recombinant protein
7
chromatin remodeller
other context
3
other post-translational modification
Date released
572
February, 2021
390
November, 2017
283
May, 2020
282
August, 2017
277
May, 2021
250
October, 2019
218
June, 2019
164
July, 2018
120
May, 2019
94
December, 2017
84
November, 2018
82
July, 2019
79
April, 2019
76
October, 2018
72
September, 2018
59
November, 2019
49
April, 2018
49
August, 2021
39
February, 2018
34
December, 2018
30
January, 2019
24
May, 2022
16
March, 2020
15
October, 2017
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
443
bam
384
bigWig
191
tsv
145
fastq
142
bed narrowPeak
115
bigBed narrowPeak
50
tagAlign
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
443
Homo sapiens
Biosample type
290
tissue
92
primary cell
61
cell line
Organ
246
liver
60
pancreas
24
adipose tissue
24
connective tissue
15
blood
15
bodily fluid
6
spleen
2
brain
2
epithelium
Project
398
AMP
45
T1D
Genome assembly (visualization)
375
hg19
330
GRCh38
Lab
398
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
4
inconsistent control run_type
target.investigated_as!
other context
BIOSAMPLE
ASSAY
443 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
liver
54
143
2
body of pancreas
33
2
2
endocrine pancreas
16
omental fat pad
11
1
subcutaneous adipose tissue
12
+ See 4 more…
primary cell
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
T follicular helper cell
2
2
T-helper 1 cell
2
2
T-helper 17 cell
2
2
+ See 21 more…
cell line
HepG2
45
1
GM12878
15
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