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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 219ChIP-seq
  • 16total RNA-seq
  • 8DNase-seq
  • 6ATAC-seq
  • 1FAIRE-seq
Assay category
  • 219DNA binding
  • 16Transcription
  • 15DNA accessibility
Target of assay
  • 173histone
  • 173histone modification
  • 118narrow histone mark
  • 55broad histone mark
  • 39control
  • 7recombinant protein
  • 7transcription factor
Date released
  • 572February, 2021
  • 392November, 2017
  • 283May, 2020
  • 282August, 2017
  • 277May, 2021
  • 250October, 2019
  • 218June, 2019
  • 164July, 2018
  • 120May, 2019
  • 94December, 2017
  • 87November, 2018
  • 82July, 2019
  • 79April, 2019
  • 76October, 2018
  • 72September, 2018
  • 59November, 2019
  • 49April, 2018
  • 49August, 2021
  • 39February, 2018
  • 34December, 2018
  • 30January, 2019
  • 24May, 2022
  • 16March, 2020
  • 15October, 2017
  • 11September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 250bam
  • 207bigWig
  • 189bed narrowPeak
  • 70bigBed narrowPeak
  • 49tagAlign
  • 16tsv
  • 9bed broadPeak
  • 9bigBed broadPeak
  • 8bed bed3+
  • 4hic
  • 3bedpe bed3+
  • 1hdf5
  • 1tagAlign bed3+
  • 1tar
Organism
  • 250Homo sapiens
Biosample type
  • 186tissue
  • 31primary cell
  • 29cell line
  • 4in vitro differentiated cells
Organ
  • 83brain
  • 68limb
  • 46blood vessel
  • 46vasculature
  • 42nerve
  • 32epithelium
  • 28kidney
  • 26artery
  • 20vein
  • 14pancreas
  • 7heart
  • 7liver
  • 1pituitary gland
Project
  • 250AMP
Genome assembly (visualization)
  • 207hg19
  • 204GRCh38
Lab
  • 250AMP-T2D consortium
Audit category:
  • 21inconsistent ontology term
BIOSAMPLE
ASSAY

250 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
tibial nerve35421
tibial artery2321
heart52
brain51
liver51
primary cell
endothelial cell of umbilical vein1721
epithelial cell of proximal tubule7
Heart fetal (cardiac muscle cell)1
Liver fetal (hepatocyte)1
kidney glomerular epithelial cell1
cell line
Panc1131
RCC 7860 HIF1a re-expression41
RCC 7860 HIF2a over-expression31
RCC 7860 vector31
glomerular visceral epithelial cell11
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)11
cardiomyocytes (cardiac muscle cell)11
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