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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1541ChIP-seq
  • 887total RNA-seq
  • 207DNase-seq
  • 172ATAC-seq
  • 106single cell RNA-seq
  • 16WGBS
  • 15small RNA-seq
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 1541DNA binding
  • 1008Transcription
  • 384DNA accessibility
  • 16DNA methylation
Target of assay
  • 784histone modification
  • 783histone
  • 468transcription factor
  • 404narrow histone mark
  • 378broad histone mark
  • 287control
  • 98RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 392November, 2017
  • 283May, 2020
  • 277May, 2021
  • 265August, 2017
  • 250October, 2019
  • 217June, 2019
  • 186February, 2021
  • 164July, 2018
  • 120May, 2019
  • 94December, 2017
  • 86November, 2018
  • 79April, 2019
  • 72September, 2018
  • 70July, 2019
  • 58November, 2019
  • 53October, 2018
  • 49April, 2018
  • 49August, 2021
  • 39February, 2018
  • 34December, 2018
  • 30January, 2019
  • 24May, 2022
  • 16March, 2020
  • 14October, 2017
  • 11September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 2950bam
  • 2744bigWig
  • 1804bed narrowPeak
  • 1314fastq
  • 1199tsv
  • 1032bigBed narrowPeak
  • 390tagAlign
  • 319bed broadPeak
  • 283bigBed broadPeak
  • 267bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 34bed bedMethyl
  • 34bigBed bedMethyl
  • 23hic
  • 22bedpe bed3+
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2943Homo sapiens
Biosample type
  • 1467tissue
  • 607primary cell
  • 582cell line
  • 291in vitro differentiated cells
  • 3stem cell
Organ
  • 689pancreas
  • 681liver
  • 593connective tissue
  • adipose tissue
  • 317epithelium
  • 243brain
  • 211heart
  • 185vasculature
  • 180blood vessel
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 60blood
  • 60bodily fluid
  • 57musculature of body
  • 42nerve
  • 36embryo
  • 24spleen
  • 20vein
  • 18ureter
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2764AMP
  • 186T1D
Genome assembly (visualization)
  • 2577hg19
  • 2536GRCh38
Lab
  • 2745AMP-T2D consortium
  • 204Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 211inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 76missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
organ_slims!
  • adipose tissue
BIOSAMPLE
ASSAY

2950 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
FAIRE-seq
pCHi-C
tissue
islet of Langerhans3026613861
liver12214721
bone tissue58
body of pancreas3524422
heart left ventricle343322
primary cell
monocyte845315
pancreatic beta cell1310712
pancreatic alpha cell1310612
pancreatic ductal cell134410
pancreatic acinar cell84512
cell line
HepG2359511
smooth muscle cell of the coronary artery6528
GM1287860
EndoC_BH115331
Panc1131
in vitro differentiated cells
cardiomyocytes359
adipocyte5341
neural progenitor cell20710
pancreatic endoderm184
cardiac precursors (cardiac muscle cell)191
stem cell
hESC3
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