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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1476ChIP-seq
  • 815total RNA-seq
  • 200DNase-seq
  • 170ATAC-seq
  • 102single cell RNA-seq
  • 16WGBS
  • 15small RNA-seq
  • 5FAIRE-seq
Assay category
  • 1476DNA binding
  • 932Transcription
  • 375DNA accessibility
  • 16DNA methylation
Target of assay
  • 751histone modification
  • 750histone
  • 445transcription factor
  • 388narrow histone mark
  • 362broad histone mark
  • 278control
  • 93RNA binding protein
  • 89recombinant protein
  • 34chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 392November, 2017
  • 283May, 2020
  • 276May, 2021
  • 250October, 2019
  • 211August, 2017
  • 200June, 2019
  • 162July, 2018
  • 121February, 2021
  • 120May, 2019
  • 94December, 2017
  • 86November, 2018
  • 79April, 2019
  • 72September, 2018
  • 66July, 2019
  • 58November, 2019
  • 53October, 2018
  • 49August, 2021
  • 47April, 2018
  • 39February, 2018
  • 34December, 2018
  • 30January, 2019
  • 24May, 2022
  • 16March, 2020
  • 14October, 2017
  • 11September, 2017
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 2799bam
  • 2599bigWig
  • 1742bed narrowPeak
  • 1257fastq
  • 1122tsv
  • 1014bigBed narrowPeak
  • 376tagAlign
  • 312bed broadPeak
  • 276bigBed broadPeak
  • 246bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 33bed bedMethyl
  • 33bigBed bedMethyl
  • 23hic
  • 22bedpe bed3+
  • 8csv
  • 6bed bed3
  • 4hdf5
  • 4tar
  • 3bed bedgraph
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2792Homo sapiens
Biosample type
  • 1409tissue
  • 582cell line
  • 573primary cell
  • 232in vitro differentiated cells
  • 3stem cell
Organ
  • 689pancreas
  • 681liver
  • connective tissue
  • 442adipose tissue
  • 317epithelium
  • 243brain
  • 211heart
  • 185vasculature
  • 180blood vessel
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 60blood
  • 60bodily fluid
  • 57musculature of body
  • 42nerve
  • 36embryo
  • 24spleen
  • 20vein
  • 18ureter
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2613AMP
  • 186T1D
Genome assembly (visualization)
  • 2435hg19
  • 2394GRCh38
Lab
  • 2594AMP-T2D consortium
  • 204Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 199inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 71missing controlled_by
Audit category:
  • 50inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
organ_slims!
  • connective tissue
BIOSAMPLE
ASSAY

2799 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
FAIRE-seq
tissue
islet of Langerhans3026613861
liver12214721
body of pancreas3524422
heart left ventricle343322
tibial nerve35421
cell line
HepG2359511
smooth muscle cell of the coronary artery6528
GM1287860
EndoC_BH115331
Panc1131
primary cell
monocyte845315
pancreatic beta cell1310712
pancreatic alpha cell1310612
pancreatic ductal cell134410
pancreatic acinar cell84512
in vitro differentiated cells
cardiomyocytes359
neural progenitor cell20710
pancreatic endoderm184
cardiac precursors (cardiac muscle cell)191
hepatocyte15
stem cell
hESC3
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