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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1485ChIP-seq
  • 1213total RNA-seq
  • 179DNase-seq
  • 163ATAC-seq
  • 106single cell RNA-seq
  • 17small RNA-seq
  • 12WGBS
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 1485DNA binding
  • 1336Transcription
  • 347DNA accessibility
  • 12DNA methylation
Target of assay
  • 724histone modification
  • 723histone
  • 473transcription factor
  • 381narrow histone mark
  • 341broad histone mark
  • 286control
  • 97RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 506February, 2021
  • 392November, 2017
  • 283May, 2020
  • 282August, 2017
  • 274May, 2021
  • 243October, 2019
  • 183June, 2019
  • 164July, 2018
  • 99May, 2019
  • 94December, 2017
  • 87November, 2018
  • 76October, 2018
  • 72September, 2018
  • 61July, 2019
  • 59November, 2019
  • 49April, 2018
  • 49August, 2021
  • 39February, 2018
  • 34December, 2018
  • 30January, 2019
  • 24May, 2022
  • 23April, 2019
  • 15October, 2017
  • 14March, 2020
  • 11September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3181bam
  • 2945bigWig
  • 1626bed narrowPeak
  • 1432tsv
  • 1358fastq
  • 948bigBed narrowPeak
  • 392tagAlign
  • 292bed broadPeak
  • 255bigBed broadPeak
  • 243bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 28bed bedMethyl
  • 28bigBed bedMethyl
  • 20bedpe bed3+
  • 20hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 3174Homo sapiens
Biosample type
  • 1775tissue
  • 597primary cell
  • 516cell line
  • 290in vitro differentiated cells
  • 3stem cell
Organ
  • 689pancreas
  • 681liver
  • 593connective tissue
  • 442adipose tissue
  • 317epithelium
  • 243brain
  • heart
  • 185vasculature
  • 180blood vessel
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 60blood
  • 60bodily fluid
  • 57musculature of body
  • 42nerve
  • 36embryo
  • 24spleen
  • 20vein
  • 18ureter
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2995AMP
  • 186T1D
Genome assembly (visualization)
  • 2816hg19
  • 2768GRCh38
Lab
  • 2976AMP-T2D consortium
  • 204Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 207inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 88missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
organ_slims!
  • heart
BIOSAMPLE
ASSAY

3181 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
pCHi-C
tissue
adipose tissue23812
islet of Langerhans3026613861
liver12214721
bone tissue58
body of pancreas3524422
primary cell
monocyte845315
pancreatic beta cell1310712
pancreatic alpha cell1310612
pancreatic ductal cell134410
pancreatic acinar cell84512
cell line
HepG2359511
GM1287860
EndoC_BH115331
Panc1131
H1-hESC8
in vitro differentiated cells
cardiomyocytes359
adipocyte5341
neural progenitor cell20710
pancreatic endoderm184
cardiac precursors (cardiac muscle cell)191
stem cell
hESC3
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