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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1123total RNA-seq
  • 1068ChIP-seq
  • 204DNase-seq
  • 172ATAC-seq
  • 106single cell RNA-seq
  • 17WGBS
  • 15small RNA-seq
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 1244Transcription
  • 1068DNA binding
  • 381DNA accessibility
  • 17DNA methylation
Target of assay
  • 705histone
  • 705histone modification
  • 355narrow histone mark
  • 349broad histone mark
  • 205control
  • 159transcription factor
  • 46RNA binding protein
  • 13chromatin remodeller
  • 7recombinant protein
  • 3other context
  • 3other post-translational modification
Date released
  • 571February, 2021
  • 277May, 2021
  • 256August, 2017
  • 243October, 2019
  • 216June, 2019
  • 164July, 2018
  • 120May, 2019
  • 90May, 2020
  • 79April, 2019
  • 78November, 2017
  • 76October, 2018
  • 75July, 2019
  • 72September, 2018
  • 59November, 2019
  • 49April, 2018
  • 45August, 2021
  • 39February, 2018
  • 34December, 2018
  • 34November, 2018
  • 31December, 2017
  • 25January, 2019
  • 24May, 2022
  • 15March, 2020
  • 15October, 2017
  • 11September, 2017
  • 6November, 2020
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 2711bam
  • 2547bigWig
  • 1426tsv
  • 1376bed narrowPeak
  • 893fastq
  • 684bigBed narrowPeak
  • 312tagAlign
  • 260bed bed3+
  • 259bed broadPeak
  • 222bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 33bed bedMethyl
  • 33bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 11bed bed3
  • 7bed bedgraph
  • 7csv
  • 4hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
Organism
  • 2704Homo sapiens
Biosample type
  • 1619tissue
  • 597primary cell
  • 276in vitro differentiated cells
  • 216cell line
  • 3stem cell
Organ
  • 689pancreas
  • liver
  • 593connective tissue
  • 442adipose tissue
  • 317epithelium
  • 243brain
  • 211heart
  • 185vasculature
  • 180blood vessel
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 60blood
  • 60bodily fluid
  • 57musculature of body
  • 42nerve
  • 36embryo
  • 24spleen
  • 20vein
  • 18ureter
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2525AMP
  • 186T1D
Genome assembly (visualization)
  • 2428GRCh38
  • 2413hg19
Lab
  • 2506AMP-T2D consortium
  • 204Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 211inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 75missing controlled_by
Audit category:
  • 29inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • liver
BIOSAMPLE
ASSAY

2711 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
FAIRE-seq
pCHi-C
tissue
adipose tissue38122
islet of Langerhans2663013861
bone tissue58
body of pancreas2354422
heart left ventricle334322
primary cell
monocyte538415
pancreatic beta cell1013712
pancreatic alpha cell1013612
pancreatic ductal cell413410
pancreatic acinar cell48512
in vitro differentiated cells
cardiomyocytes593
adipocyte4531
neural progenitor cell72010
pancreatic endoderm418
cardiac precursors (cardiac muscle cell)191
cell line
smooth muscle cell of the coronary artery5268
GM1287860
EndoC_BH133151
Panc1131
H1-hESC8
stem cell
hESC3
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