Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1561ChIP-seq
  • 1278total RNA-seq
  • 176DNase-seq
  • 175ATAC-seq
  • 106single cell RNA-seq
  • 17WGBS
  • 16small RNA-seq
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 1561DNA binding
  • 1400Transcription
  • 356DNA accessibility
  • 17DNA methylation
Target of assay
  • 771histone modification
  • 770histone
  • 485transcription factor
  • 399narrow histone mark
  • 370broad histone mark
  • 303control
  • 103RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 572February, 2021
  • 392November, 2017
  • 283May, 2020
  • 282August, 2017
  • 277May, 2021
  • 250October, 2019
  • 175June, 2019
  • 164July, 2018
  • 113May, 2019
  • 94December, 2017
  • 87November, 2018
  • 79April, 2019
  • 77July, 2019
  • 76October, 2018
  • 72September, 2018
  • 59November, 2019
  • 49April, 2018
  • 49August, 2021
  • 39February, 2018
  • 34December, 2018
  • 30January, 2019
  • 24May, 2022
  • 15October, 2017
  • 14March, 2020
  • 11September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3335bam
  • 3101bigWig
  • 1757bed narrowPeak
  • 1591tsv
  • 1356fastq
  • 995bigBed narrowPeak
  • 383tagAlign
  • 276bed broadPeak
  • 252bigBed broadPeak
  • 239bed bed3+
  • 160txt
  • 153zippedFastqFolder
  • 64xls
  • 32bed bedMethyl
  • 32bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 3328Homo sapiens
Biosample type
  • 1863tissue
  • 596primary cell
  • 582cell line
  • 291in vitro differentiated cells
  • 3stem cell
Organ
  • 689pancreas
  • 681liver
  • 593connective tissue
  • 442adipose tissue
  • 317epithelium
  • 243brain
  • 211heart
  • 185vasculature
  • 180blood vessel
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 60blood
  • 60bodily fluid
  • musculature of body
  • 42nerve
  • 36embryo
  • 24spleen
  • 20vein
  • 18ureter
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 3149AMP
  • 186T1D
Genome assembly (visualization)
  • 2945hg19
  • 2906GRCh38
Lab
  • 3130AMP-T2D consortium
  • 204Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 203inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 88missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
organ_slims!
  • musculature of body
BIOSAMPLE
ASSAY

3335 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
FAIRE-seq
pCHi-C
tissue
adipose tissue23812
islet of Langerhans3026613861
liver12214721
bone tissue58
body of pancreas3524422
primary cell
monocyte845315
pancreatic beta cell1310712
pancreatic alpha cell1310612
pancreatic ductal cell134410
pancreatic acinar cell84512
cell line
HepG2359511
smooth muscle cell of the coronary artery6528
GM1287860
EndoC_BH115331
Panc1131
in vitro differentiated cells
cardiomyocytes359
adipocyte5341
neural progenitor cell20710
pancreatic endoderm184
cardiac precursors (cardiac muscle cell)191
stem cell
hESC3
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego