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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1380ChIP-seq
  • 952total RNA-seq
  • 201DNase-seq
  • 110ATAC-seq
  • 26single cell RNA-seq
  • 16small RNA-seq
  • 14WGBS
  • 3FAIRE-seq
  • 1pCHi-C
Assay category
  • 1380DNA binding
  • 994Transcription
  • 314DNA accessibility
  • 14DNA methylation
Target of assay
  • 648histone modification
  • 647histone
  • 466transcription factor
  • 338narrow histone mark
  • 308broad histone mark
  • 264control
  • 94RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 546February, 2021
  • 392November, 2017
  • 283May, 2020
  • 236October, 2019
  • 233May, 2021
  • 214June, 2019
  • 118May, 2019
  • 114August, 2017
  • 94December, 2017
  • 80November, 2018
  • 79April, 2019
  • 78July, 2019
  • 49August, 2021
  • 39February, 2018
  • 34December, 2018
  • 30January, 2019
  • 23October, 2018
  • 11July, 2018
  • 11October, 2017
  • 10April, 2018
  • 10March, 2020
  • 6November, 2019
  • 6November, 2020
  • 5December, 2019
  • 2June, 2018
Available data
  • 2703bam
  • 2546bigWig
  • 1603bed narrowPeak
  • 1183tsv
  • 951bigBed narrowPeak
  • 887fastq
  • 379tagAlign
  • 301bed broadPeak
  • 278bigBed broadPeak
  • 244bed bed3+
  • 155txt
  • 73zippedFastqFolder
  • 64xls
  • 30bed bedMethyl
  • 30bigBed bedMethyl
  • 16bedpe bed3+
  • 16hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 4tar
  • 2ibed
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2703Homo sapiens
Biosample type
  • 1478tissue
  • 519cell line
  • 415primary cell
  • 288in vitro differentiated cells
  • 3stem cell
Organ
  • pancreas
  • 681liver
  • 593connective tissue
  • 442adipose tissue
  • 317epithelium
  • 243brain
  • 211heart
  • 185vasculature
  • 180blood vessel
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 60blood
  • 60bodily fluid
  • 57musculature of body
  • 42nerve
  • 36embryo
  • 24spleen
  • 20vein
  • 18ureter
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2523AMP
  • 180T1D
Genome assembly (visualization)
  • 2363hg19
  • 2338GRCh38
Lab
  • 2523AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
Audit category:
  • 158inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 34missing controlled_by
Audit category:
  • 47inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

2703 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
pCHi-C
tissue
adipose tissue23812
liver12214721
bone tissue58
heart left ventricle343322
tibial nerve35421
cell line
HepG2359511
smooth muscle cell of the coronary artery6528
GM1287860
H1-hESC8
RCC 7860 HIF1a re-expression41
primary cell
monocyte845315
endothelial cell of umbilical vein1721
skeletal muscle myoblast1512
epithelial cell of proximal tubule1011
hepatocyte451
in vitro differentiated cells
cardiomyocytes359
adipocyte5341
neural progenitor cell20710
pancreatic endoderm184
cardiac precursors (cardiac muscle cell)191
stem cell
hESC3
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