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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1476ChIP-seq
  • 1224total RNA-seq
  • 198DNase-seq
  • 164ATAC-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 16WGBS
  • 4FAIRE-seq
  • 1pCHi-C
Assay category
  • 1476DNA binding
  • 1348Transcription
  • 366DNA accessibility
  • 16DNA methylation
Target of assay
  • 714histone modification
  • 713histone
  • 476transcription factor
  • 379narrow histone mark
  • 333broad histone mark
  • 284control
  • 98RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 506February, 2021
  • 386November, 2017
  • 283May, 2020
  • 282August, 2017
  • 277May, 2021
  • 211June, 2019
  • 204October, 2019
  • 164July, 2018
  • 94December, 2017
  • 87November, 2018
  • 79April, 2019
  • 76October, 2018
  • 73July, 2019
  • 72September, 2018
  • 70May, 2019
  • 59November, 2019
  • 49April, 2018
  • 49August, 2021
  • 39February, 2018
  • 34December, 2018
  • 30January, 2019
  • 24May, 2022
  • 15March, 2020
  • 15October, 2017
  • 11September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3207bam
  • 3014bigWig
  • 1684bed narrowPeak
  • 1532tsv
  • 1352fastq
  • 959bigBed narrowPeak
  • 392tagAlign
  • 305bed broadPeak
  • 268bigBed broadPeak
  • 260bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 34bed bedMethyl
  • 34bigBed bedMethyl
  • 21bedpe bed3+
  • 20hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 3cool
  • 3hdf5
  • 3tar
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 3200Homo sapiens
Biosample type
  • 1820tissue
  • 577primary cell
  • 516cell line
  • 291in vitro differentiated cells
  • 3stem cell
Organ
  • 689pancreas
  • 681liver
  • 593connective tissue
  • 442adipose tissue
  • 317epithelium
  • 243brain
  • 211heart
  • vasculature
  • 180blood vessel
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 60blood
  • 60bodily fluid
  • 57musculature of body
  • 42nerve
  • 36embryo
  • 24spleen
  • 20vein
  • 18ureter
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 3021AMP
  • 186T1D
Genome assembly (visualization)
  • 2839hg19
  • 2803GRCh38
Lab
  • 3002AMP-T2D consortium
  • 204Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 211inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 88missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
organ_slims!
  • vasculature
BIOSAMPLE
ASSAY

3207 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
pCHi-C
tissue
adipose tissue23812
islet of Langerhans3026613861
liver12214721
bone tissue58
body of pancreas3524422
primary cell
monocyte845315
pancreatic beta cell1310712
pancreatic alpha cell1310612
pancreatic ductal cell134410
pancreatic acinar cell84512
cell line
HepG2359511
GM1287860
EndoC_BH115331
Panc1131
H1-hESC8
in vitro differentiated cells
cardiomyocytes359
adipocyte5341
neural progenitor cell20710
pancreatic endoderm184
cardiac precursors (cardiac muscle cell)191
stem cell
hESC3
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