Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
400
total RNA-seq
75
ChIP-seq
8
DNase-seq
4
ATAC-seq
3
small RNA-seq
2
WGBS
Assay category
403
Transcription
75
DNA binding
12
DNA accessibility
2
DNA methylation
Target of assay
31
control
26
histone
26
histone modification
18
transcription factor
16
broad histone mark
10
narrow histone mark
6
RNA binding protein
Date released
386
February, 2021
42
October, 2019
23
October, 2018
17
August, 2017
13
July, 2019
8
June, 2019
1
November, 2018
1
November, 2019
1
October, 2017
Available data
492
bam
463
bigWig
412
tsv
73
bed narrowPeak
44
fastq
42
bigBed narrowPeak
12
bed bed3+
9
bed broadPeak
8
bigBed broadPeak
8
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
1
bedpe bed3+
Organism
492
Homo sapiens
Biosample type
485
tissue
7
primary cell
Organ
689
pancreas
681
liver
593
connective tissue
442
adipose tissue
317
epithelium
243
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
492
AMP
Genome assembly (visualization)
461
GRCh38
459
hg19
Lab
492
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
492 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
tissue
adipose tissue
381
2
2
tibial nerve
4
35
2
1
subcutaneous adipose tissue
6
12
1
1
omental fat pad
4
11
2
1
1
white adipose tissue
12
+ See 3 more…
primary cell
retinal pigment epithelial cell
3
1
mesenchymal stem cell of adipose
1
1
pericardium fibroblast
1
See all biosamples
Download