Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
74
ChIP-seq
5
DNase-seq
4
ATAC-seq
4
WGBS
3
small RNA-seq
1
FAIRE-seq
Assay category
398
Transcription
74
DNA binding
10
DNA accessibility
4
DNA methylation
Target of assay
29
control
23
transcription factor
22
histone
22
histone modification
13
broad histone mark
9
narrow histone mark
5
RNA binding protein
3
other context
3
other post-translational modification
Date released
386
February, 2021
23
October, 2018
20
October, 2019
17
August, 2017
12
July, 2019
10
November, 2018
7
December, 2018
7
January, 2019
2
October, 2017
1
June, 2019
1
November, 2019
Available data
486
bam
456
bigWig
402
tsv
68
fastq
40
bed narrowPeak
36
bigBed narrowPeak
9
bed bed3+
8
bed broadPeak
8
tagAlign
7
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
tar
Organism
486
Homo sapiens
Biosample type
464
tissue
22
primary cell
Organ
689
pancreas
681
liver
593
connective tissue
442
adipose tissue
317
epithelium
243
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
blood
60
bodily fluid
57
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
486
AMP
Genome assembly (visualization)
451
GRCh38
450
hg19
Lab
486
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
organ_slims!
blood
BIOSAMPLE
ASSAY
486 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
FAIRE-seq
tissue
adipose tissue
381
2
2
spleen
20
1
1
2
subcutaneous adipose tissue
6
12
1
1
omental fat pad
4
11
2
1
1
white adipose tissue
12
+ See 2 more…
primary cell
endothelial cell of umbilical vein
17
2
1
mesenchymal stem cell of adipose
1
1
See all biosamples
Download