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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 395total RNA-seq
  • 37ChIP-seq
  • 3ATAC-seq
  • 3small RNA-seq
  • 2DNase-seq
  • 2WGBS
Assay category
  • 398Transcription
  • 37DNA binding
  • 5DNA accessibility
  • 2DNA methylation
Target of assay
  • 19control
  • 17transcription factor
  • 5RNA binding protein
  • 1histone
  • 1histone modification
  • 1narrow histone mark
Date released
  • 386February, 2021
  • 23October, 2018
  • 17August, 2017
  • 12July, 2019
  • 1June, 2019
  • 1November, 2018
  • 1November, 2019
  • 1October, 2017
Available data
  • 442bam
  • 425bigWig
  • 401tsv
  • 44fastq
  • 13bed narrowPeak
  • 10bigBed narrowPeak
  • 8tagAlign
  • 6bed bed3+
  • 3bed broadPeak
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 2bigBed broadPeak
  • 1bedpe bed3+
Organism
  • 442Homo sapiens
Biosample type
  • 440tissue
  • 2primary cell
Organ
  • 689pancreas
  • 681liver
  • 593connective tissue
  • 442adipose tissue
  • 317epithelium
  • 243brain
  • 211heart
  • 185vasculature
  • 180blood vessel
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 60blood
  • 60bodily fluid
  • 57musculature of body
  • 42nerve
  • 36embryo
  • 24spleen
  • 20vein
  • 18ureter
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 442AMP
Genome assembly (visualization)
  • 423GRCh38
  • 421hg19
Lab
  • 442AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 12missing controlled_by
BIOSAMPLE
ASSAY

442 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
WGBS
tissue
adipose tissue38122
subcutaneous adipose tissue61211
omental fat pad411112
white adipose tissue12
visceral abdominal adipose tissue3
primary cell
mesenchymal stem cell of adipose11
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