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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
37
ChIP-seq
18
ATAC-seq
8
DNase-seq
Assay category
54
Transcription
37
DNA binding
26
DNA accessibility
Target of assay
21
histone
21
histone modification
14
broad histone mark
10
control
7
narrow histone mark
6
transcription factor
2
RNA binding protein
Date released
74
February, 2021
26
October, 2019
9
June, 2019
5
May, 2019
3
July, 2019
Available data
117
bam
115
bed narrowPeak
91
bigWig
63
tsv
31
bigBed narrowPeak
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
6
tagAlign
4
bed bed3
4
txt
1
bed bedMethyl
1
bigBed bedMethyl
Organism
117
Homo sapiens
Biosample type
66
cell line
45
tissue
6
primary cell
Organ
689
pancreas
681
liver
593
connective tissue
442
adipose tissue
317
epithelium
243
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
117
AMP
Genome assembly (visualization)
107
GRCh38
107
hg19
Lab
117
AMP-T2D consortium
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
117 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
cell line
smooth muscle cell of the coronary artery
52
6
8
tissue
tibial artery
23
1
2
coronary artery
5
1
2
retina
3
distal epiphysis
1
distal epiphysis of femur
1
+ See 6 more…
primary cell
retinal pigment epithelial cell
3
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
See all biosamples
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