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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 196ChIP-seq
  • 32DNase-seq
  • 5total RNA-seq
  • 4small RNA-seq
  • 3single cell RNA-seq
  • 2ATAC-seq
  • 1FAIRE-seq
Assay category
  • 196DNA binding
  • 35DNA accessibility
  • 12Transcription
Target of assay
  • 166histone
  • 166histone modification
  • 105narrow histone mark
  • 61broad histone mark
  • 30control
  • 3RNA binding protein
  • 3transcription factor
Date released
  • 83October, 2019
  • 78November, 2017
  • 30June, 2019
  • 28May, 2019
  • 13July, 2019
  • 9October, 2017
  • 2November, 2018
Available data
  • 243bam
  • 222bigWig
  • 203bed narrowPeak
  • 127bigBed narrowPeak
  • 118tagAlign
  • 47bed broadPeak
  • 38bigBed broadPeak
  • 35bed bed3+
  • 26tsv
  • 21fastq
  • 3hdf5
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3
  • 1tagAlign bed3+
Organism
  • 243Homo sapiens
Biosample type
  • 226tissue
  • 17primary cell
Organ
  • 689pancreas
  • 681liver
  • 593connective tissue
  • 442adipose tissue
  • 317epithelium
  • 243brain
  • 211heart
  • 185vasculature
  • 180blood vessel
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 60blood
  • 60bodily fluid
  • 57musculature of body
  • 42nerve
  • 36embryo
  • 24spleen
  • 20vein
  • 18ureter
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 243AMP
Genome assembly (visualization)
  • 215GRCh38
  • 155hg19
Lab
  • 243AMP-T2D consortium
Audit category:
  • 2inconsistent ontology term
Audit category:
  • 3missing controlled_by
BIOSAMPLE
ASSAY

243 results

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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
brain13141
layer of hippocampus20
temporal lobe1511
angular gyrus15
caudate nucleus141
primary cell
astrocyte of the cerebellum31
brain microvascular endothelial cell31
choroid plexus epithelial cell31
cerebellar granule cell2
Purkinje cell1
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