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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 467total RNA-seq
  • 102ChIP-seq
  • 9DNase-seq
  • 5ATAC-seq
  • 4single cell RNA-seq
  • 3small RNA-seq
  • 2WGBS
  • 1pCHi-C
Assay category
  • 474Transcription
  • 102DNA binding
  • 14DNA accessibility
  • 2DNA methylation
Target of assay
  • 40transcription factor
  • 34histone
  • 34histone modification
  • 28control
  • 17narrow histone mark
  • 16broad histone mark
  • 10RNA binding protein
  • 2chromatin remodeller
Date released
  • 451February, 2021
  • 71August, 2017
  • 23October, 2018
  • 18June, 2019
  • 16July, 2019
  • 6November, 2020
  • 2April, 2018
  • 2July, 2018
  • 1May, 2021
  • 1November, 2018
  • 1November, 2019
  • 1October, 2017
Available data
  • 593bam
  • 570bigWig
  • 478tsv
  • 101fastq
  • 75bed narrowPeak
  • 28bigBed narrowPeak
  • 27bed bed3+
  • 22tagAlign
  • 10bed broadPeak
  • 9bigBed broadPeak
  • 6bed bed3
  • 4bed bedgraph
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 1bedpe bed3+
  • 1hdf5
Organism
  • 593Homo sapiens
Biosample type
  • 498tissue
  • 59in vitro differentiated cells
  • 36primary cell
Organ
  • 689pancreas
  • 681liver
  • 593connective tissue
  • 442adipose tissue
  • 317epithelium
  • 243brain
  • 211heart
  • 185vasculature
  • 180blood vessel
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 60blood
  • 60bodily fluid
  • 57musculature of body
  • 42nerve
  • 36embryo
  • 24spleen
  • 20vein
  • 18ureter
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 593AMP
Genome assembly (visualization)
  • 565GRCh38
  • 563hg19
Lab
  • 593AMP-T2D consortium
Audit category:
  • 13inconsistent ontology term
Audit category:
  • 17missing controlled_by
Audit category:
  • 6inconsistent control read length
BIOSAMPLE
ASSAY

593 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
pCHi-C
tissue
adipose tissue38122
bone tissue58
subcutaneous adipose tissue61211
omental fat pad411211
white adipose tissue12
in vitro differentiated cells
adipocyte4531
cardiac fibroblast1
primary cell
osteoblast5121
cardiac fibroblast53
mesenchymal stem cell7
pancreatic stellate cell4
mesenchymal stem cell of adipose11
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