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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 129ChIP-seq
  • 76total RNA-seq
  • 70single cell RNA-seq
  • 24ATAC-seq
  • 17DNase-seq
  • 1FAIRE-seq
Assay category
  • 146Transcription
  • 129DNA binding
  • 42DNA accessibility
Target of assay
  • 93histone
  • 93histone modification
  • 49narrow histone mark
  • 44broad histone mark
  • 27control
  • 9transcription factor
  • 8RNA binding protein
  • 1chromatin remodeller
Date released
  • 61September, 2018
  • 33April, 2018
  • 33July, 2018
  • 32October, 2019
  • 29August, 2017
  • 26February, 2021
  • 20June, 2019
  • 19December, 2017
  • 15November, 2019
  • 10May, 2021
  • 6November, 2017
  • 5December, 2019
  • 5July, 2019
  • 5May, 2019
  • 5September, 2017
  • 4August, 2021
  • 3August, 2018
  • 3March, 2020
  • 2October, 2018
  • 1June, 2018
Available data
  • 317bam
  • 301bigWig
  • 257fastq
  • 156tsv
  • 151bed narrowPeak
  • 80zippedFastqFolder
  • 76bigBed narrowPeak
  • 22bed broadPeak
  • 22bigBed broadPeak
  • 21bed bed3+
  • 7tagAlign
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6hic
  • 5bedpe bed3+
  • 3cool
  • 2hdf5
  • 1tar
Organism
  • 317Homo sapiens
Biosample type
  • 242primary cell
  • 51cell line
  • 24in vitro differentiated cells
Organ
  • 689pancreas
  • 681liver
  • 593connective tissue
  • 442adipose tissue
  • 317epithelium
  • 243brain
  • 211heart
  • 185vasculature
  • 180blood vessel
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 60blood
  • 60bodily fluid
  • 57musculature of body
  • 42nerve
  • 36embryo
  • 24spleen
  • 20vein
  • 18ureter
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 313AMP
  • 4T1D
Genome assembly (visualization)
  • 284GRCh38
  • 283hg19
Lab
  • 317AMP-T2D consortium
Audit category:
  • 63inconsistent ontology term
Audit category:
  • 21missing controlled_by
Audit category:
  • 5inconsistent control read length
BIOSAMPLE
ASSAY

317 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic beta cell1310127
pancreatic alpha cell1310126
pancreatic ductal cell134104
pancreatic acinar cell84125
endothelial cell of umbilical vein1721
cell line
EndoC_BH115331
glomerular visceral epithelial cell11
in vitro differentiated cells
hepatocyte15
Hepatic endoderm4
pancreatic PP cell3
endothelial cell1
intermediate endothelial cell1
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