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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
ChIP-seq
28
DNase-seq
15
total RNA-seq
6
WGBS
3
ATAC-seq
1
small RNA-seq
Assay category
82
DNA binding
31
DNA accessibility
16
Transcription
6
DNA methylation
Target of assay
59
histone
59
histone modification
37
broad histone mark
22
narrow histone mark
16
control
7
transcription factor
5
RNA binding protein
Date released
56
April, 2019
33
June, 2019
18
July, 2019
16
May, 2019
7
October, 2019
3
May, 2021
2
March, 2020
Available data
160
bigWig
138
bed narrowPeak
135
bam
113
tsv
89
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
135
Homo sapiens
Biosample type
124
tissue
10
primary cell
1
in vitro differentiated cells
Organ
689
pancreas
681
liver
593
connective tissue
442
adipose tissue
317
epithelium
243
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
135
AMP
Genome assembly (visualization)
119
GRCh38
110
hg19
Lab
135
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
organ_slims!
artery
lymph node
BIOSAMPLE
ASSAY
135 results
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ChIP-seq
DNase-seq
total RNA-seq
WGBS
ATAC-seq
small RNA-seq
tissue
heart left ventricle
34
3
3
2
2
heart
14
18
4
1
1
heart right ventricle
13
1
1
2
right atrium auricular region
10
2
2
1
right cardiac atrium
6
1
+ See 3 more…
primary cell
cardiac fibroblast
5
3
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
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