Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 93ChIP-seq
  • 69total RNA-seq
  • 30DNase-seq
  • 12ATAC-seq
  • 6WGBS
  • 1small RNA-seq
Assay category
  • 93DNA binding
  • 70Transcription
  • 42DNA accessibility
  • 6DNA methylation
Target of assay
  • 61histone
  • 61histone modification
  • 37broad histone mark
  • 24narrow histone mark
  • 20control
  • 12transcription factor
  • 6RNA binding protein
Date released
  • 66February, 2021
  • 56April, 2019
  • 35June, 2019
  • 21July, 2019
  • 21May, 2019
  • 7October, 2019
  • 3May, 2021
  • 2March, 2020
Available data
  • 224bigWig
  • 211bam
  • 191bed narrowPeak
  • 168tsv
  • 94bigBed narrowPeak
  • 30bed bed3+
  • 30bed broadPeak
  • 30bigBed broadPeak
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 6tagAlign
  • 3bedpe bed3+
  • 3hic
Organism
  • 211Homo sapiens
Biosample type
  • 132tissue
  • 66cell line
  • 12primary cell
  • 1in vitro differentiated cells
Organ
  • 689pancreas
  • 681liver
  • 593connective tissue
  • 442adipose tissue
  • 317epithelium
  • 243brain
  • 211heart
  • 185vasculature
  • 180blood vessel
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 60blood
  • 60bodily fluid
  • 57musculature of body
  • 42nerve
  • 36embryo
  • 24spleen
  • 20vein
  • 18ureter
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 211AMP
Genome assembly (visualization)
  • 191GRCh38
  • 182hg19
Lab
  • 211AMP-T2D consortium
Audit category:
  • 5inconsistent ontology term
BIOSAMPLE
ASSAY

211 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
tissue
heart left ventricle343322
heart1441811
heart right ventricle13112
right atrium auricular region10221
coronary artery521
cell line
smooth muscle cell of the coronary artery6528
primary cell
cardiac fibroblast53
cardiac atrium fibroblast1
cardiac ventricle fibroblast1
endothelial cell of coronary artery1
smooth muscle cell of the coronary artery1
in vitro differentiated cells
cardiac fibroblast1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego