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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 79DNase-seq
  • 52ChIP-seq
  • 11total RNA-seq
  • 1FAIRE-seq
  • 1small RNA-seq
Assay category
  • 80DNA accessibility
  • 52DNA binding
  • 12Transcription
Target of assay
  • 30histone
  • 30histone modification
  • 15broad histone mark
  • 15narrow histone mark
  • 12control
  • 10transcription factor
  • 7recombinant protein
  • 3RNA binding protein
Date released
  • 81June, 2019
  • 28October, 2019
  • 23April, 2019
  • 7July, 2019
  • 5May, 2019
Available data
  • 183bed narrowPeak
  • 144bam
  • 131bigWig
  • 104bigBed narrowPeak
  • 78bed bed3+
  • 78bed broadPeak
  • 78bigBed broadPeak
  • 64xls
  • 62txt
  • 24tsv
  • 5csv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 1hic
Organism
  • 144Homo sapiens
Biosample type
  • 98tissue
  • 31primary cell
  • 15cell line
Organ
  • 689pancreas
  • 681liver
  • 593connective tissue
  • 442adipose tissue
  • 317epithelium
  • 243brain
  • 211heart
  • 185vasculature
  • 180blood vessel
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 60blood
  • 60bodily fluid
  • 57musculature of body
  • 42nerve
  • 36embryo
  • 24spleen
  • 20vein
  • 18ureter
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 144AMP
Genome assembly (visualization)
  • 130GRCh38
  • 124hg19
Lab
  • 144AMP-T2D consortium
Audit category:
  • 20inconsistent ontology term
BIOSAMPLE
ASSAY

144 results

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Clear Filters
DNase-seq
ChIP-seq
total RNA-seq
FAIRE-seq
small RNA-seq
tissue
kidney13271
renal cortex interstitium11
renal pelvis10
right kidney10
left kidney9
primary cell
epithelial cell of proximal tubule1101
kidney epithelial cell151
kidney tubule cell21
glomerular endothelial cell11
glomerular visceral epithelial cell2
cell line
RCC 7860 HIF1a re-expression41
RCC 7860 HIF2a over-expression31
RCC 7860 vector31
glomerular visceral epithelial cell11
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