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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
487
ChIP-seq
159
total RNA-seq
5
DNase-seq
3
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
487
DNA binding
162
Transcription
8
DNA accessibility
1
DNA methylation
Target of assay
326
transcription factor
101
control
82
recombinant protein
80
histone modification
79
histone
57
RNA binding protein
50
narrow histone mark
29
broad histone mark
chromatin remodeller
2
other context
2
other post-translational modification
Date released
299
November, 2017
193
May, 2020
60
December, 2017
48
November, 2018
26
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
2
June, 2019
1
February, 2021
1
March, 2020
Available data
658
bam
599
bigWig
442
fastq
418
bed narrowPeak
335
bigBed narrowPeak
174
tsv
86
tagAlign
59
bed broadPeak
59
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
658
Homo sapiens
Biosample type
346
cell line
286
tissue
14
in vitro differentiated cells
12
primary cell
Organ
689
pancreas
658
liver
591
connective tissue
442
adipose tissue
316
epithelium
243
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
57
musculature of body
50
blood
50
bodily fluid
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
658
AMP
Genome assembly (visualization)
562
hg19
510
GRCh38
Lab
658
AMP-T2D consortium
Audit category:
25
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
7
missing controlled_by
Audit category:
16
inconsistent control read length
organ_slims!
adrenal gland
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
658 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
cell line
HepG2
339
5
1
1
tissue
liver
120
147
2
1
right lobe of liver
10
2
1
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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