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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 510ChIP-seq
  • 159total RNA-seq
  • 5DNase-seq
  • 3ATAC-seq
  • 3small RNA-seq
  • 1WGBS
Assay category
  • 510DNA binding
  • 162Transcription
  • 8DNA accessibility
  • 1DNA methylation
Target of assay
  • 326transcription factor
  • 101control
  • 82recombinant protein
  • 80histone modification
  • 79histone
  • 57RNA binding protein
  • 50narrow histone mark
  • 29broad histone mark
  • 23chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 314November, 2017
  • 193May, 2020
  • 63December, 2017
  • 53November, 2018
  • 26August, 2017
  • 7July, 2019
  • 7October, 2019
  • 5December, 2019
  • 5January, 2019
  • 4August, 2021
  • 2June, 2019
  • 1February, 2021
  • 1March, 2020
Available data
  • 681bam
  • 622bigWig
  • 465fastq
  • 441bed narrowPeak
  • 358bigBed narrowPeak
  • 174tsv
  • 86tagAlign
  • 63bed broadPeak
  • 63bigBed broadPeak
  • 13bed bed3+
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1csv
  • 1hdf5
  • 1vcf
Organism
  • 681Homo sapiens
Biosample type
  • 366cell line
  • 288tissue
  • 15in vitro differentiated cells
  • 12primary cell
Organ
  • 689pancreas
  • 681liver
  • 593connective tissue
  • 442adipose tissue
  • 317epithelium
  • 243brain
  • 211heart
  • 185vasculature
  • 180blood vessel
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 60blood
  • 60bodily fluid
  • 57musculature of body
  • 42nerve
  • 36embryo
  • 24spleen
  • 20vein
  • 18ureter
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 681AMP
Genome assembly (visualization)
  • 585hg19
  • 531GRCh38
Lab
  • 681AMP-T2D consortium
Audit category:
  • 27inconsistent control
  • 1inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 13missing controlled_by
Audit category:
  • 27inconsistent control read length
  • 8inconsistent control run_type
BIOSAMPLE
ASSAY

681 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
cell line
HepG2359511
tissue
liver12214721
right lobe of liver102112
in vitro differentiated cells
hepatocyte15
primary cell
hepatocyte451
Liver fetal (hepatocyte)1
hepatic stellate cell1
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