Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
269
total RNA-seq
133
ChIP-seq
42
ATAC-seq
14
single cell RNA-seq
8
DNase-seq
4
WGBS
2
FAIRE-seq
2
small RNA-seq
Assay category
285
Transcription
133
DNA binding
52
DNA accessibility
4
DNA methylation
Target of assay
89
histone
89
histone modification
48
broad histone mark
41
narrow histone mark
27
control
17
transcription factor
8
RNA binding protein
Date released
139
August, 2017
122
July, 2018
51
October, 2018
38
November, 2019
36
May, 2021
24
May, 2022
14
October, 2019
11
September, 2018
8
April, 2018
7
November, 2018
6
September, 2017
4
July, 2019
4
June, 2019
4
October, 2017
3
March, 2020
2
May, 2019
1
March, 2019
Available data
474
bam
412
bigWig
283
tsv
243
fastq
141
bed narrowPeak
69
bigBed narrowPeak
29
bed bed3+
21
bed broadPeak
16
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
bedpe bed3+
3
hic
1
bedpe
1
hdf5
Organism
467
Homo sapiens
Biosample type
429
tissue
31
primary cell
14
cell line
Organ
689
pancreas
681
liver
593
connective tissue
442
adipose tissue
epithelium
243
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
472
AMP
2
T1D
Genome assembly (visualization)
435
hg19
421
GRCh38
Lab
449
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
4
inconsistent ontology term
Audit category:
33
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
organ_slims!
epithelium
ovary
BIOSAMPLE
ASSAY
474 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
WGBS
FAIRE-seq
small RNA-seq
tissue
islet of Langerhans
266
30
38
6
1
1
body of pancreas
2
35
4
4
2
2
pancreas
1
16
2
2
1
endocrine pancreas
16
primary cell
pancreatic endocrine cell
23
pancreatic stellate cell
4
co-expressing pancreatic endocrine cell
2
unclassified pancreatic endocrine cell
2
cell line
Panc1
13
1
Download