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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 330total RNA-seq
  • 198ChIP-seq
  • 80single cell RNA-seq
  • 65ATAC-seq
  • 8DNase-seq
  • 4WGBS
  • 2FAIRE-seq
  • 2small RNA-seq
Assay category
  • 412Transcription
  • 198DNA binding
  • 75DNA accessibility
  • 4DNA methylation
Target of assay
  • 137histone
  • 137histone modification
  • 70broad histone mark
  • 67narrow histone mark
  • 42control
  • 19transcription factor
  • 9RNA binding protein
Date released
  • 168August, 2017
  • 153July, 2018
  • 72September, 2018
  • 53November, 2019
  • 53October, 2018
  • 44May, 2021
  • 39April, 2018
  • 26February, 2021
  • 24May, 2022
  • 14October, 2019
  • 11September, 2017
  • 7November, 2018
  • 6March, 2020
  • 4July, 2019
  • 4June, 2019
  • 4October, 2017
  • 3August, 2018
  • 2May, 2019
  • 1June, 2018
  • 1March, 2019
Available data
  • 689bam
  • 623bigWig
  • 471fastq
  • 417tsv
  • 214bed narrowPeak
  • 91bigBed narrowPeak
  • 80zippedFastqFolder
  • 29bed bed3+
  • 21bed broadPeak
  • 19tagAlign
  • 7bedpe bed3+
  • 7bigBed broadPeak
  • 7hic
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6txt
  • 3cool
  • 1bedpe
  • 1hdf5
Organism
  • 682Homo sapiens
Biosample type
  • 429tissue
  • 194primary cell
  • 63cell line
  • 3in vitro differentiated cells
Organ
  • 689pancreas
  • 681liver
  • 593connective tissue
  • 442adipose tissue
  • 317epithelium
  • 243brain
  • 211heart
  • 185vasculature
  • 180blood vessel
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 60blood
  • 60bodily fluid
  • 57musculature of body
  • 42nerve
  • 36embryo
  • 24spleen
  • 20vein
  • 18ureter
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 683AMP
  • 6T1D
Genome assembly (visualization)
  • 635hg19
  • 621GRCh38
Lab
  • 664AMP-T2D consortium
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 54inconsistent ontology term
Audit category:
  • 54missing controlled_by
Audit category:
  • 9inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

689 results

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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
small RNA-seq
tissue
islet of Langerhans2663063811
body of pancreas2354422
pancreas116221
endocrine pancreas16
primary cell
pancreatic beta cell1013127
pancreatic alpha cell1013126
pancreatic ductal cell413104
pancreatic acinar cell48125
pancreatic endocrine cell23
cell line
EndoC_BH133151
Panc1131
in vitro differentiated cells
pancreatic PP cell3
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