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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1214total RNA-seq
  • 103single cell RNA-seq
  • 18small RNA-seq
  • 7ChIP-seq
Assay category
  • 1335Transcription
  • 7DNA binding
Target of assay
  • 6histone
  • 6histone modification
  • 4broad histone mark
  • 2narrow histone mark
  • 1control
Date released
  • 544February, 2021
  • 173May, 2021
  • 164July, 2018
  • 143May, 2020
  • 96August, 2017
  • 49April, 2018
  • 49July, 2019
  • 26September, 2018
  • 20November, 2019
  • 15August, 2021
  • 15February, 2018
  • 13March, 2020
  • 12October, 2019
  • 6May, 2022
  • 5December, 2019
  • 4November, 2020
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
Available data
  • 1478tsv
  • 1342bam
  • 1337bigWig
  • 373fastq
  • 157txt
  • 52zippedFastqFolder
  • 8csv
  • 7tagAlign
  • 6bed broadPeak
  • 6bed narrowPeak
  • 6bigBed narrowPeak
  • 2bed bed3+
Organism
  • 1335Homo sapiens
Biosample type
  • 926tissue
  • 190primary cell
  • 127in vitro differentiated cells
  • 99cell line
Organ
  • 468connective tissue
  • 419pancreas
  • 397adipose tissue
  • 157liver
  • 141epithelium
  • 66heart
  • 58bone element
  • 56blood vessel
  • 56vasculature
  • 52artery
  • 14embryo
  • 9brain
  • 8kidney
  • 5musculature of body
Project
  • 1289AMP
  • 53T1D
Genome assembly (visualization)
  • 1335GRCh38
  • 1335hg19
Lab
  • 1285AMP-T2D consortium
  • 57Kyle Gaulton, UCSD
Audit category:
  • 130inconsistent ontology term
Audit category:
  • 1inconsistent assembly
replicates.library.nucleic_acid_term_name!
  • DNA
BIOSAMPLE
ASSAY

1342 results

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Clear Filters
total RNA-seq
single cell RNA-seq
small RNA-seq
ChIP-seq
tissue
adipose tissue381
islet of Langerhans2666
liver1471
bone tissue58
pancreas17
primary cell
monocyte51
pancreatic alpha cell1012
pancreatic beta cell1012
pancreatic acinar cell412
pancreatic ductal cell410
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
neural progenitor cell7
adipocyte4
cell line
smooth muscle cell of the coronary artery52
EndoC_BH133
H1-hESC8
early embryonic cell2
RCC 7860 HIF1a re-expression1
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