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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1578ChIP-seq
  • 209DNase-seq
  • 175ATAC-seq
  • 68total RNA-seq
  • 18WGBS
  • 5FAIRE-seq
  • 3single cell RNA-seq
  • 1pCHi-C
Assay category
  • 1578DNA binding
  • 389DNA accessibility
  • 71Transcription
  • 18DNA methylation
Target of assay
  • 785histone modification
  • 784histone
  • 485transcription factor
  • 405narrow histone mark
  • 378broad histone mark
  • 306control
  • 103RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 392November, 2017
  • 238October, 2019
  • 218June, 2019
  • 193August, 2017
  • 140May, 2020
  • 120May, 2019
  • 104May, 2021
  • 94December, 2017
  • 87November, 2018
  • 79April, 2019
  • 74October, 2018
  • 46September, 2018
  • 39November, 2019
  • 34August, 2021
  • 34December, 2018
  • 33July, 2019
  • 30January, 2019
  • 28February, 2021
  • 24February, 2018
  • 18May, 2022
  • 15October, 2017
  • 11September, 2017
  • 3March, 2020
  • 2November, 2020
  • 1March, 2019
Available data
  • 2057bam
  • 1838bigWig
  • 1817bed narrowPeak
  • 1042bigBed narrowPeak
  • 992fastq
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 271bed bed3+
  • 122tsv
  • 101zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 5txt
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2050Homo sapiens
Biosample type
  • 988tissue
  • 483cell line
  • 419primary cell
  • 164in vitro differentiated cells
  • 3stem cell
Organ
  • 524liver
  • 277pancreas
  • 234brain
  • 176epithelium
  • 145heart
  • 136kidney
  • 129vasculature
  • 125connective tissue
  • 124blood vessel
  • 114limb
  • 60blood
  • 60bodily fluid
  • 52musculature of body
  • 50artery
  • 45adipose tissue
  • 42nerve
  • 24spleen
  • 22embryo
  • 20vein
  • 18ureter
  • 8bone element
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 1924AMP
  • 133T1D
Genome assembly (visualization)
  • 1669hg19
  • 1630GRCh38
Lab
  • 1909AMP-T2D consortium
  • 147Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 82inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 88missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
replicates.library.nucleic_acid_term_name!
  • RNA
BIOSAMPLE
ASSAY

2057 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
WGBS
FAIRE-seq
single cell RNA-seq
pCHi-C
tissue
liver1222
islet of Langerhans301381
body of pancreas35442
tibial nerve35214
heart left ventricle34322
cell line
HepG2359151
GM1287860
EndoC_BH1151
Panc1131
smooth muscle cell of the coronary artery68
primary cell
monocyte84152
pancreatic endocrine cell23
endothelial cell of umbilical vein1721
pancreatic beta cell137
pancreatic alpha cell136
in vitro differentiated cells
adipocyte531
neural progenitor cell2010
pancreatic endoderm18
hepatocyte15
definitive endodermal cell8
stem cell
hESC3
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