Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1420ChIP-seq
  • 1140total RNA-seq
  • 184DNase-seq
  • 117ATAC-seq
  • 21single cell RNA-seq
  • 18WGBS
  • 7small RNA-seq
  • 2FAIRE-seq
Assay category
  • 1420DNA binding
  • 1168Transcription
  • 303DNA accessibility
  • 18DNA methylation
Target of assay
  • 663histone modification
  • 662histone
  • 463transcription factor
  • 342broad histone mark
  • 319narrow histone mark
  • 292control
  • 99RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 564February, 2021
  • 392November, 2017
  • 249August, 2017
  • 207October, 2019
  • 197May, 2020
  • 188June, 2019
  • 173May, 2021
  • 120July, 2018
  • 120May, 2019
  • 91December, 2017
  • 85November, 2018
  • 78April, 2019
  • 75October, 2018
  • 72September, 2018
  • 58November, 2019
  • 46July, 2019
  • 38February, 2018
  • 34December, 2018
  • 30January, 2019
  • 24May, 2022
  • 15October, 2017
  • 13March, 2020
  • 10April, 2018
  • 9September, 2017
  • 8August, 2021
  • 6November, 2020
  • 5December, 2019
  • 2June, 2018
Available data
  • 2909bam
  • 2702bigWig
  • 1644bed narrowPeak
  • 1298tsv
  • 1229fastq
  • 1002bigBed narrowPeak
  • 296bed broadPeak
  • 282tagAlign
  • 261bigBed broadPeak
  • 205bed bed3+
  • 156txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 16bedpe bed3+
  • 15hic
  • 7bed bedgraph
  • 6bed bed3
  • 6csv
  • 5hdf5
  • 4tar
  • 2ibed
  • 1vcf
Organism
  • 2902Homo sapiens
Biosample type
  • 1769tissue
  • 582cell line
  • 341primary cell
  • 214in vitro differentiated cells
  • 3stem cell
Organ
  • 668liver
  • 590pancreas
  • 554connective tissue
  • 430adipose tissue
  • 242epithelium
  • 194brain
  • 194heart
  • 183vasculature
  • 178blood vessel
  • 129kidney
  • 114limb
  • 100artery
  • 66bone element
  • 60blood
  • 60bodily fluid
  • 53musculature of body
  • 42nerve
  • 34embryo
  • 24spleen
  • 20vein
  • 18ureter
  • 8skeleton
  • 5eye
Project
  • 2835AMP
  • 74T1D
Genome assembly (visualization)
  • 2538hg19
  • 2537GRCh38
Lab
  • 2815AMP-T2D consortium
  • 94Kyle Gaulton, UCSD
Audit category:
  • 174inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 74missing controlled_by
Audit category:
  • 52inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

2909 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
FAIRE-seq
tissue
adipose tissue23812
islet of Langerhans8264371
liver11614511
bone tissue58
body of pancreas3524422
cell line
HepG2359511
smooth muscle cell of the coronary artery6528
GM1287860
EndoC_BH115331
Panc1131
primary cell
monocyte382813
pancreatic beta cell131071
pancreatic alpha cell131061
pancreatic endocrine cell23
pancreatic ductal cell13441
in vitro differentiated cells
adipocyte4641
cardiomyocytes347
pancreatic endoderm184
cardiac precursors (cardiac muscle cell)191
hepatocyte15
stem cell
hESC3
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego