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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1231total RNA-seq
  • 1007ChIP-seq
  • 187DNase-seq
  • 149ATAC-seq
  • 102single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 4FAIRE-seq
  • 1pCHi-C
Assay category
  • 1351Transcription
  • 1007DNA binding
  • 340DNA accessibility
  • 17DNA methylation
Target of assay
  • 657histone modification
  • 656histone
  • 342narrow histone mark
  • 313broad histone mark
  • 249control
  • 101transcription factor
  • 30RNA binding protein
  • 4chromatin remodeller
  • 3other context
  • 3other post-translational modification
  • 1recombinant protein
Date released
  • 551February, 2021
  • 283May, 2020
  • 276May, 2021
  • 263August, 2017
  • 186June, 2019
  • 179October, 2019
  • 163July, 2018
  • 106May, 2019
  • 98November, 2017
  • 78April, 2019
  • 78July, 2019
  • 72September, 2018
  • 69October, 2018
  • 49April, 2018
  • 41August, 2021
  • 39February, 2018
  • 36November, 2019
  • 35December, 2017
  • 25November, 2018
  • 24May, 2022
  • 15October, 2017
  • 11September, 2017
  • 10March, 2020
  • 9January, 2019
  • 7December, 2018
  • 6November, 2020
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 2716bam
  • 2558bigWig
  • 1531tsv
  • 1262bed narrowPeak
  • 857fastq
  • 553bigBed narrowPeak
  • 372tagAlign
  • 234bed bed3+
  • 223bed broadPeak
  • 186bigBed broadPeak
  • 158txt
  • 153zippedFastqFolder
  • 64xls
  • 19hic
  • 17bedpe bed3+
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 11bed bed3
  • 8csv
  • 3cool
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2709Homo sapiens
Biosample type
  • 1814tissue
  • 522primary cell
  • 235in vitro differentiated cells
  • 145cell line
Organ
  • 646pancreas
  • 589connective tissue
  • 442adipose tissue
  • 283liver
  • 251epithelium
  • 223brain
  • 197heart
  • 146vasculature
  • 145blood vessel
  • 117kidney
  • 109limb
  • 95artery
  • 66bone element
  • 47musculature of body
  • 42nerve
  • 25embryo
  • 24spleen
  • 18ureter
  • 8skeleton
  • 4blood
  • 4bodily fluid
  • 4eye
  • 2vein
  • 1pericardium
  • 1pituitary gland
Project
  • 2534AMP
  • 182T1D
Genome assembly (visualization)
  • 2383GRCh38
  • 2376hg19
Lab
  • 2511AMP-T2D consortium
  • 204Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 151inconsistent ontology term
Audit category:
  • 76missing controlled_by
Audit category:
  • 22inconsistent control read length
  • 1inconsistent assembly
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

2716 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
pCHi-C
tissue
adipose tissue38122
islet of Langerhans2663011961
liver1468621
bone tissue58
heart left ventricle333322
primary cell
monocyte538415
pancreatic alpha cell1013612
pancreatic beta cell1012712
pancreatic ductal cell413410
pancreatic acinar cell48512
in vitro differentiated cells
cardiomyocytes593
adipocyte453
neural progenitor cell72010
pancreatic endoderm415
induced pluripotent stem cell9
cell line
smooth muscle cell of the coronary artery5248
EndoC_BH131131
HepG227
GM128784
Panc12
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