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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 729ChIP-seq
  • 193total RNA-seq
  • 89single cell RNA-seq
  • 84ATAC-seq
  • 47DNase-seq
  • 11small RNA-seq
  • 4FAIRE-seq
  • 1WGBS
  • 1pCHi-C
Assay category
  • 729DNA binding
  • 293Transcription
  • 135DNA accessibility
  • 1DNA methylation
Target of assay
  • 406transcription factor
  • 250histone
  • 250histone modification
  • 149narrow histone mark
  • 101broad histone mark
  • 88recombinant protein
  • 77RNA binding protein
  • 71control
  • 32chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 294November, 2017
  • 114October, 2019
  • 105May, 2021
  • 86May, 2020
  • 64November, 2018
  • 62December, 2017
  • 62June, 2019
  • 52August, 2017
  • 49August, 2021
  • 45July, 2018
  • 40July, 2019
  • 39April, 2018
  • 29February, 2021
  • 27December, 2018
  • 24November, 2019
  • 21January, 2019
  • 14May, 2019
  • 9March, 2020
  • 8October, 2018
  • 5December, 2019
  • 3August, 2018
  • 2April, 2019
  • 2September, 2017
  • 1February, 2018
  • 1June, 2018
  • 1March, 2019
Available data
  • 1159bam
  • 1078bigWig
  • 728bed narrowPeak
  • 630fastq
  • 529bigBed narrowPeak
  • 371tsv
  • 142tagAlign
  • 125bed broadPeak
  • 123bigBed broadPeak
  • 107bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 1159Homo sapiens
Biosample type
  • 437cell line
  • 355primary cell
  • 231tissue
  • 133in vitro differentiated cells
  • 3stem cell
Organ
  • 411liver
  • 142pancreas
  • 141epithelium
  • 69brain
  • 56blood
  • 56bodily fluid
  • 43connective tissue
  • 42kidney
  • 41vasculature
  • 37blood vessel
  • 31heart
  • 18vein
  • 14musculature of body
  • 13embryo
  • 12adipose tissue
  • 9artery
  • 5eye
  • 5limb
  • 1pericardium
  • 1pituitary gland
Project
  • 1043AMP
  • 116T1D
Genome assembly (visualization)
  • 1082hg19
  • 998GRCh38
Lab
  • 1048AMP-T2D consortium
  • 110Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 99inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 26missing controlled_by
Audit category:
  • 38inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

1159 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
FAIRE-seq
WGBS
pCHi-C
cell line
HepG2332511
GM1287856
Panc1111
H1-hESC8
RCC 7860 HIF1a re-expression41
primary cell
monocyte46252
endothelial cell of umbilical vein1611
skeletal muscle myoblast1512
pancreatic beta cell111
pancreatic alpha cell11
tissue
islet of Langerhans2226201
liver4231
heart5341
brain512
body of pancreas7
in vitro differentiated cells
neural progenitor cell20710
cardiac precursors (cardiac muscle cell)191
hepatocyte15
cardiomyocytes12
induced pluripotent stem cell9
stem cell
hESC3
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