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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 158ChIP-seq
  • 142total RNA-seq
  • 85single cell RNA-seq
  • 58ATAC-seq
  • 25DNase-seq
  • 11small RNA-seq
  • 3FAIRE-seq
  • 1pCHi-C
Assay category
  • 238Transcription
  • 158DNA binding
  • 86DNA accessibility
Target of assay
  • 122histone
  • 122histone modification
  • 86narrow histone mark
  • 36broad histone mark
  • 22transcription factor
  • 14control
  • 4RNA binding protein
Date released
  • 104May, 2021
  • 86May, 2020
  • 44July, 2018
  • 43October, 2019
  • 41August, 2021
  • 39April, 2018
  • 36July, 2019
  • 33August, 2017
  • 30June, 2019
  • 8February, 2021
  • 3August, 2018
  • 3December, 2017
  • 3March, 2020
  • 2November, 2018
  • 2September, 2017
  • 1April, 2019
  • 1February, 2018
  • 1June, 2018
  • 1March, 2019
  • 1November, 2019
  • 1October, 2018
Available data
  • 483bam
  • 467bigWig
  • 302tsv
  • 173bed narrowPeak
  • 129fastq
  • 116tagAlign
  • 68bed bed3+
  • 40bigBed narrowPeak
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 6bed bed3
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 483Homo sapiens
Biosample type
  • 268primary cell
  • 138tissue
  • 77in vitro differentiated cells
Organ
  • 99pancreas
  • 75epithelium
  • 49brain
  • 39connective tissue
  • 17heart
  • 15kidney
  • 13liver
  • 12adipose tissue
  • 4musculature of body
  • 2artery
  • 2blood vessel
  • 2embryo
  • 2eye
  • 2vasculature
  • 1pericardium
  • 1pituitary gland
Project
  • 371AMP
  • 112T1D
Genome assembly (visualization)
  • 460hg19
  • 422GRCh38
Lab
  • 372AMP-T2D consortium
  • 110Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 38inconsistent ontology term
Audit category:
  • 14missing controlled_by
Audit category:
  • 4inconsistent control read length
BIOSAMPLE
ASSAY

483 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte46252
pancreatic alpha cell11
pancreatic beta cell11
pancreatic delta cell10
pancreatic ductal cell9
tissue
islet of Langerhans222611
liver621
heart241
frontal cortex1211
kidney121
in vitro differentiated cells
neural progenitor cell20710
cardiomyocytes12
induced pluripotent stem cell9
adipocyte7
cardiac fibroblast1
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