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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
571
ChIP-seq
51
total RNA-seq
26
ATAC-seq
22
DNase-seq
4
single cell RNA-seq
1
FAIRE-seq
1
WGBS
Assay category
571
DNA binding
55
Transcription
49
DNA accessibility
1
DNA methylation
Target of assay
384
transcription factor
128
histone
128
histone modification
88
recombinant protein
73
RNA binding protein
65
broad histone mark
63
narrow histone mark
57
control
32
chromatin remodeller
2
other context
2
other post-translational modification
Date released
294
November, 2017
71
October, 2019
62
November, 2018
59
December, 2017
32
June, 2019
27
December, 2018
23
November, 2019
21
February, 2021
21
January, 2019
19
August, 2017
14
May, 2019
8
August, 2021
7
October, 2018
6
March, 2020
5
December, 2019
4
July, 2019
1
April, 2019
1
July, 2018
1
May, 2021
Available data
676
bam
611
bigWig
555
bed narrowPeak
501
fastq
489
bigBed narrowPeak
99
bed broadPeak
99
bigBed broadPeak
69
tsv
39
bed bed3+
26
tagAlign
20
bed bedMethyl
20
bigBed bedMethyl
7
bed bedgraph
6
bedpe bed3+
5
hdf5
4
hic
4
tar
3
txt
2
ibed
1
bed bed3
Organism
676
Homo sapiens
Biosample type
437
cell line
93
tissue
87
primary cell
56
in vitro differentiated cells
3
stem cell
Organ
398
liver
66
epithelium
56
blood
56
bodily fluid
43
pancreas
39
vasculature
35
blood vessel
27
kidney
20
brain
18
vein
14
heart
11
embryo
10
musculature of body
7
artery
5
limb
4
connective tissue
3
eye
Project
672
AMP
4
T1D
Genome assembly (visualization)
622
hg19
576
GRCh38
Lab
676
AMP-T2D consortium
Audit category:
61
inconsistent ontology term
28
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
34
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
BIOSAMPLE
ASSAY
676 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
FAIRE-seq
WGBS
cell line
HepG2
332
5
1
1
GM12878
56
Panc1
11
1
H1-hESC
8
RCC 7860 HIF1a re-expression
4
1
+ See 6 more…
tissue
liver
36
1
islet of Langerhans
19
body of pancreas
7
thoracic aorta
7
brain
5
1
+ See 8 more…
primary cell
endothelial cell of umbilical vein
16
1
1
skeletal muscle myoblast
15
1
2
skeletal muscle satellite cell
8
hepatocyte
5
kidney epithelial cell
4
1
+ See 17 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
19
1
hepatocyte
15
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
Posterior foregut
3
cardiomyocytes (cardiac muscle cell)
2
1
+ See 5 more…
stem cell
hESC
3
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