Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 571ChIP-seq
  • 51total RNA-seq
  • 26ATAC-seq
  • 22DNase-seq
  • 4single cell RNA-seq
  • 1FAIRE-seq
  • 1WGBS
Assay category
  • 571DNA binding
  • 55Transcription
  • 49DNA accessibility
  • 1DNA methylation
Target of assay
  • 384transcription factor
  • 128histone
  • 128histone modification
  • 88recombinant protein
  • 73RNA binding protein
  • 65broad histone mark
  • 63narrow histone mark
  • 57control
  • 32chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 294November, 2017
  • 71October, 2019
  • 62November, 2018
  • 59December, 2017
  • 32June, 2019
  • 27December, 2018
  • 23November, 2019
  • 21February, 2021
  • 21January, 2019
  • 19August, 2017
  • 14May, 2019
  • 8August, 2021
  • 7October, 2018
  • 6March, 2020
  • 5December, 2019
  • 4July, 2019
  • 1April, 2019
  • 1July, 2018
  • 1May, 2021
Available data
  • 676bam
  • 611bigWig
  • 555bed narrowPeak
  • 501fastq
  • 489bigBed narrowPeak
  • 99bed broadPeak
  • 99bigBed broadPeak
  • 69tsv
  • 39bed bed3+
  • 26tagAlign
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 4tar
  • 3txt
  • 2ibed
  • 1bed bed3
Organism
  • 676Homo sapiens
Biosample type
  • 437cell line
  • 93tissue
  • 87primary cell
  • 56in vitro differentiated cells
  • 3stem cell
Organ
  • 398liver
  • 66epithelium
  • 56blood
  • 56bodily fluid
  • 43pancreas
  • 39vasculature
  • 35blood vessel
  • 27kidney
  • 20brain
  • 18vein
  • 14heart
  • 11embryo
  • 10musculature of body
  • 7artery
  • 5limb
  • 4connective tissue
  • 3eye
Project
  • 672AMP
  • 4T1D
Genome assembly (visualization)
  • 622hg19
  • 576GRCh38
Lab
  • 676AMP-T2D consortium
Audit category:
  • 61inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 12missing controlled_by
Audit category:
  • 34inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
BIOSAMPLE
ASSAY

676 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
FAIRE-seq
WGBS
cell line
HepG2332511
GM1287856
Panc1111
H1-hESC8
RCC 7860 HIF1a re-expression41
tissue
liver361
islet of Langerhans19
body of pancreas7
thoracic aorta7
brain51
primary cell
endothelial cell of umbilical vein1611
skeletal muscle myoblast1512
skeletal muscle satellite cell8
hepatocyte5
kidney epithelial cell41
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)191
hepatocyte15
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
Posterior foregut3
cardiomyocytes (cardiac muscle cell)21
stem cell
hESC3
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego