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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1089total RNA-seq
  • 849ChIP-seq
  • 162DNase-seq
  • 91ATAC-seq
  • 17WGBS
  • 17single cell RNA-seq
  • 7small RNA-seq
  • 1FAIRE-seq
Assay category
  • 1113Transcription
  • 849DNA binding
  • 254DNA accessibility
  • 17DNA methylation
Target of assay
  • 535histone modification
  • 534histone
  • 277broad histone mark
  • 256narrow histone mark
  • 235control
  • 79transcription factor
  • 26RNA binding protein
  • 4chromatin remodeller
  • 3other context
  • 3other post-translational modification
  • 1recombinant protein
Date released
  • 543February, 2021
  • 230August, 2017
  • 197May, 2020
  • 172May, 2021
  • 156June, 2019
  • 136October, 2019
  • 119July, 2018
  • 106May, 2019
  • 98November, 2017
  • 77April, 2019
  • 72September, 2018
  • 68October, 2018
  • 42July, 2019
  • 38February, 2018
  • 35November, 2019
  • 32December, 2017
  • 24May, 2022
  • 23November, 2018
  • 15October, 2017
  • 10April, 2018
  • 9January, 2019
  • 9September, 2017
  • 7December, 2018
  • 7March, 2020
  • 6November, 2020
  • 2June, 2018
Available data
  • 2233bam
  • 2091bigWig
  • 1229tsv
  • 1089bed narrowPeak
  • 728fastq
  • 513bigBed narrowPeak
  • 256tagAlign
  • 197bed broadPeak
  • 166bed bed3+
  • 162bigBed broadPeak
  • 153txt
  • 153zippedFastqFolder
  • 64xls
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 11hic
  • 10bedpe bed3+
  • 6csv
  • 5bed bed3
  • 1vcf
Organism
  • 2226Homo sapiens
Biosample type
  • 1676tissue
  • 254primary cell
  • 158in vitro differentiated cells
  • 145cell line
Organ
  • 550connective tissue
  • 547pancreas
  • 430adipose tissue
  • 270liver
  • 180heart
  • 176epithelium
  • 174brain
  • 144vasculature
  • 143blood vessel
  • 109limb
  • 102kidney
  • 93artery
  • 66bone element
  • 43musculature of body
  • 42nerve
  • 24spleen
  • 23embryo
  • 18ureter
  • 8skeleton
  • 4blood
  • 4bodily fluid
  • 2eye
  • 2vein
Project
  • 2163AMP
  • 70T1D
Genome assembly (visualization)
  • 1961GRCh38
  • 1916hg19
Lab
  • 2139AMP-T2D consortium
  • 94Kyle Gaulton, UCSD
Audit category:
  • 113inconsistent ontology term
Audit category:
  • 62missing controlled_by
Audit category:
  • 18inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

2233 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
single cell RNA-seq
small RNA-seq
FAIRE-seq
tissue
adipose tissue38122
islet of Langerhans2648181
liver1448011
bone tissue58
body of pancreas2284422
primary cell
monocyte283813
pancreatic alpha cell101361
pancreatic beta cell101271
pancreatic endocrine cell23
pancreatic ductal cell41341
in vitro differentiated cells
adipocyte446
cardiomyocytes473
pancreatic endoderm415
definitive endodermal cell25
primitive gut cell25
cell line
smooth muscle cell of the coronary artery5248
EndoC_BH131131
HepG227
GM128784
Panc12
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