Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1475ChIP-seq
  • 1282total RNA-seq
  • 209DNase-seq
  • 175ATAC-seq
  • 106single cell RNA-seq
  • 18WGBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 1475DNA binding
  • 1406Transcription
  • 389DNA accessibility
  • 18DNA methylation
Target of assay
  • 785histone modification
  • 784histone
  • 485transcription factor
  • 405narrow histone mark
  • 378broad histone mark
  • 306control
  • RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 572February, 2021
  • 355November, 2017
  • 283May, 2020
  • 277May, 2021
  • 274August, 2017
  • 250October, 2019
  • 214June, 2019
  • 164July, 2018
  • 115May, 2019
  • 90December, 2017
  • 82July, 2019
  • 75April, 2019
  • 72September, 2018
  • 66November, 2018
  • 65October, 2018
  • 58November, 2019
  • 49April, 2018
  • 49August, 2021
  • 39February, 2018
  • 32December, 2018
  • 24January, 2019
  • 24May, 2022
  • 16March, 2020
  • 15October, 2017
  • 11September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3289bam
  • 3063bigWig
  • 1712bed narrowPeak
  • 1600tsv
  • 1269fastq
  • 949bigBed narrowPeak
  • 398tagAlign
  • 313bed broadPeak
  • 276bigBed broadPeak
  • 271bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 3tar
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 3282Homo sapiens
Biosample type
  • 1884tissue
  • 599primary cell
  • 518cell line
  • 285in vitro differentiated cells
  • 3stem cell
Organ
  • 680pancreas
  • 624liver
  • 583connective tissue
  • 437adipose tissue
  • 309epithelium
  • 240brain
  • 205heart
  • 180vasculature
  • 176blood vessel
  • 141kidney
  • 114limb
  • 101artery
  • 66bone element
  • 57musculature of body
  • 50blood
  • 50bodily fluid
  • 42nerve
  • 36embryo
  • 24spleen
  • 20vein
  • 18ureter
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 3103AMP
  • 186T1D
Genome assembly (visualization)
  • 2899hg19
  • 2864GRCh38
Lab
  • 3084AMP-T2D consortium
  • 204Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 208inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 85missing controlled_by
Audit category:
  • 50inconsistent control read length
  • 6inconsistent control run_type
  • 3inconsistent assembly
target.investigated_as!
  • RNA binding protein
BIOSAMPLE
ASSAY

3289 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
FAIRE-seq
pCHi-C
tissue
adipose tissue23812
islet of Langerhans2826613861
liver12114721
bone tissue58
body of pancreas3024422
primary cell
monocyte845315
pancreatic beta cell1310712
pancreatic alpha cell1310612
pancreatic ductal cell134410
pancreatic acinar cell84512
cell line
HepG2306511
smooth muscle cell of the coronary artery6528
GM1287850
EndoC_BH114331
Panc1131
in vitro differentiated cells
cardiomyocytes359
adipocyte4941
neural progenitor cell20710
pancreatic endoderm184
cardiac precursors (cardiac muscle cell)191
stem cell
hESC3
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego