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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1282total RNA-seq
  • 1200ChIP-seq
  • 209DNase-seq
  • 175ATAC-seq
  • 106single cell RNA-seq
  • 18WGBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 1406Transcription
  • 1200DNA binding
  • 389DNA accessibility
  • 18DNA methylation
Target of assay
  • 785histone modification
  • 784histone
  • 485transcription factor
  • 405narrow histone mark
  • broad histone mark
  • 306control
  • 103RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 572February, 2021
  • 346November, 2017
  • 283May, 2020
  • 233August, 2017
  • 233May, 2021
  • 210June, 2019
  • 195October, 2019
  • 164July, 2018
  • 87November, 2018
  • 82July, 2019
  • 79December, 2017
  • 62May, 2019
  • 57October, 2018
  • 55September, 2018
  • 53November, 2019
  • 49April, 2018
  • 42April, 2019
  • 42August, 2021
  • 34December, 2018
  • 31February, 2018
  • 26January, 2019
  • 24May, 2022
  • 16March, 2020
  • 11September, 2017
  • 10October, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3014bam
  • 2742bigWig
  • 1600tsv
  • 1397bed narrowPeak
  • 1240fastq
  • 800bigBed narrowPeak
  • 286bed broadPeak
  • 269bigBed broadPeak
  • 261bed bed3+
  • 251tagAlign
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 3011Homo sapiens
Biosample type
  • 1685tissue
  • 564cell line
  • 509primary cell
  • 254in vitro differentiated cells
  • 2stem cell
Organ
  • 652liver
  • 619pancreas
  • 577connective tissue
  • 442adipose tissue
  • 273epithelium
  • 182brain
  • 174heart
  • 140vasculature
  • 135blood vessel
  • 129kidney
  • 88artery
  • 80limb
  • 66bone element
  • 60blood
  • 60bodily fluid
  • 49musculature of body
  • 32embryo
  • 26nerve
  • 20spleen
  • 18ureter
  • 11vein
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2872AMP
  • 142T1D
Genome assembly (visualization)
  • 2660hg19
  • 2587GRCh38
Lab
  • 2853AMP-T2D consortium
  • 160Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 198inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 64missing controlled_by
Audit category:
  • 41inconsistent control read length
  • 9inconsistent control run_type
  • 1inconsistent assembly
target.investigated_as!
  • broad histone mark
BIOSAMPLE
ASSAY

3014 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
FAIRE-seq
pCHi-C
tissue
adipose tissue38122
islet of Langerhans2662413861
liver14711221
bone tissue58
body of pancreas2244422
cell line
HepG2535111
smooth muscle cell of the coronary artery5268
GM1287860
EndoC_BH13391
Panc191
primary cell
monocyte534015
pancreatic beta cell1010712
pancreatic alpha cell1010612
pancreatic acinar cell44512
pancreatic ductal cell47410
in vitro differentiated cells
cardiomyocytes593
adipocyte4411
neural progenitor cell71410
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm414
stem cell
hESC2
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