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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1282total RNA-seq
  • 1275ChIP-seq
  • 209DNase-seq
  • 175ATAC-seq
  • 103single cell RNA-seq
  • 18WGBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 1403Transcription
  • 1275DNA binding
  • 389DNA accessibility
  • 18DNA methylation
Target of assay
  • 785histone modification
  • 784histone
  • 485transcription factor
  • 405narrow histone mark
  • 378broad histone mark
  • control
  • 103RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 569February, 2021
  • 321November, 2017
  • 276May, 2021
  • 260May, 2020
  • 251August, 2017
  • 211October, 2019
  • 210June, 2019
  • 164July, 2018
  • 97May, 2019
  • 81November, 2018
  • 79July, 2019
  • 73December, 2017
  • 72September, 2018
  • 65April, 2019
  • 57November, 2019
  • 49April, 2018
  • 47October, 2018
  • 41August, 2021
  • 31February, 2018
  • 30December, 2018
  • 26January, 2019
  • 24May, 2022
  • 16March, 2020
  • 13October, 2017
  • 6November, 2020
  • 5December, 2019
  • 5September, 2017
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3146bigWig
  • 3086bam
  • 1817bed narrowPeak
  • 1597tsv
  • 1190fastq
  • 1042bigBed narrowPeak
  • 330tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 264bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 3080Homo sapiens
Biosample type
  • 1740tissue
  • 577primary cell
  • 506cell line
  • 261in vitro differentiated cells
  • 2stem cell
Organ
  • 647pancreas
  • 580liver
  • 565connective tissue
  • 423adipose tissue
  • 290epithelium
  • 213brain
  • 191heart
  • 163vasculature
  • 159blood vessel
  • 132kidney
  • 97limb
  • 93artery
  • 66bone element
  • 54blood
  • 54bodily fluid
  • 54musculature of body
  • 31nerve
  • 29embryo
  • 18ureter
  • 18vein
  • 16spleen
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2900AMP
  • 186T1D
Genome assembly (visualization)
  • 2969hg19
  • 2947GRCh38
Lab
  • 2881AMP-T2D consortium
  • 204Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 200inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 88missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
target.investigated_as!
  • control
BIOSAMPLE
ASSAY

3086 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
FAIRE-seq
pCHi-C
tissue
adipose tissue38112
islet of Langerhans2662313861
liver1478221
bone tissue58
body of pancreas2264422
primary cell
monocyte538415
pancreatic beta cell107712
pancreatic alpha cell107612
pancreatic ductal cell413410
pancreatic acinar cell48512
cell line
HepG2530311
smooth muscle cell of the coronary artery5248
GM1287854
EndoC_BH133131
H1-hESC8
in vitro differentiated cells
cardiomyocytes593
adipocyte4471
neural progenitor cell71310
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm413
stem cell
hESC2
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