Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1282total RNA-seq
  • 793ChIP-seq
  • 209DNase-seq
  • 175ATAC-seq
  • 106single cell RNA-seq
  • 18WGBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 1406Transcription
  • 793DNA binding
  • 389DNA accessibility
  • 18DNA methylation
Target of assay
  • histone modification
  • 784histone
  • 485transcription factor
  • 405narrow histone mark
  • 378broad histone mark
  • 306control
  • 103RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 572February, 2021
  • 317November, 2017
  • 256May, 2020
  • 199June, 2019
  • 191May, 2021
  • 179August, 2017
  • 164July, 2018
  • 87November, 2018
  • 82July, 2019
  • 77October, 2019
  • 63December, 2017
  • 49April, 2018
  • 49November, 2019
  • 46October, 2018
  • 40September, 2018
  • 34December, 2018
  • 33August, 2021
  • 28May, 2019
  • 24May, 2022
  • 23February, 2018
  • 23January, 2019
  • 20April, 2019
  • 13March, 2020
  • 11September, 2017
  • 9October, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 2607bam
  • 2300bigWig
  • 1600tsv
  • 1128fastq
  • 966bed narrowPeak
  • 651bigBed narrowPeak
  • 257bed broadPeak
  • 255bigBed broadPeak
  • 248bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 77tagAlign
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 2606Homo sapiens
Biosample type
  • 1441tissue
  • 547cell line
  • 406primary cell
  • 212in vitro differentiated cells
  • 1stem cell
Organ
  • 601liver
  • 559connective tissue
  • 552pancreas
  • 441adipose tissue
  • 224epithelium
  • 150heart
  • 114kidney
  • 114vasculature
  • 110blood vessel
  • 82artery
  • 77brain
  • 66bone element
  • 66limb
  • 59blood
  • 59bodily fluid
  • 43musculature of body
  • 24embryo
  • 18nerve
  • 18spleen
  • 18ureter
  • 8skeleton
  • 6eye
  • 5vein
  • 1pericardium
Project
  • 2509AMP
  • 98T1D
Genome assembly (visualization)
  • 2271hg19
  • 2192GRCh38
Lab
  • 2486AMP-T2D consortium
  • 120Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 179inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 35missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 8inconsistent control run_type
target.investigated_as!
  • histone modification
BIOSAMPLE
ASSAY

2607 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
FAIRE-seq
pCHi-C
tissue
adipose tissue38112
islet of Langerhans2661413861
liver1477721
bone tissue58
body of pancreas2184422
cell line
HepG2534411
smooth muscle cell of the coronary artery5268
GM1287859
EndoC_BH13331
H1-hESC8
primary cell
monocyte5315
pancreatic beta cell106712
pancreatic alpha cell106612
pancreatic acinar cell4512
pancreatic ductal cell4410
in vitro differentiated cells
cardiomyocytes593
adipocyte4281
neural progenitor cell7710
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm48
stem cell
hESC1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego