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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1282total RNA-seq
  • 1173ChIP-seq
  • 209DNase-seq
  • 175ATAC-seq
  • 106single cell RNA-seq
  • 18WGBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 1406Transcription
  • 1173DNA binding
  • 389DNA accessibility
  • 18DNA methylation
Target of assay
  • 785histone modification
  • 784histone
  • 485transcription factor
  • narrow histone mark
  • 378broad histone mark
  • 306control
  • 103RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 572February, 2021
  • 363November, 2017
  • 256May, 2020
  • 235May, 2021
  • 230August, 2017
  • 207June, 2019
  • 164July, 2018
  • 132October, 2019
  • 87November, 2018
  • 86May, 2019
  • 82July, 2019
  • 78December, 2017
  • 65October, 2018
  • 57April, 2019
  • 57September, 2018
  • 55November, 2019
  • 49April, 2018
  • 40August, 2021
  • 34December, 2018
  • 31February, 2018
  • 27January, 2019
  • 24May, 2022
  • 14October, 2017
  • 13March, 2020
  • 11September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 2987bam
  • 2729bigWig
  • 1600tsv
  • 1388bed narrowPeak
  • 1248fastq
  • 893bigBed narrowPeak
  • 293bed broadPeak
  • 271bigBed broadPeak
  • 260bed bed3+
  • 224tagAlign
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 2982Homo sapiens
Biosample type
  • 1664tissue
  • 565cell line
  • 506primary cell
  • 250in vitro differentiated cells
  • 2stem cell
Organ
  • 631liver
  • 622pancreas
  • 576connective tissue
  • 441adipose tissue
  • 268epithelium
  • 187heart
  • 159vasculature
  • 155blood vessel
  • 138brain
  • 129kidney
  • 100limb
  • 96artery
  • 66bone element
  • 59blood
  • 59bodily fluid
  • 51musculature of body
  • 34nerve
  • 28embryo
  • 22spleen
  • 18ureter
  • 14vein
  • 8skeleton
  • 6eye
  • 1pericardium
Project
  • 2845AMP
  • 142T1D
Genome assembly (visualization)
  • 2611hg19
  • 2566GRCh38
Lab
  • 2822AMP-T2D consortium
  • 164Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 193inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 59missing controlled_by
Audit category:
  • 40inconsistent control read length
  • 8inconsistent control run_type
  • 2inconsistent assembly
target.investigated_as!
  • narrow histone mark
BIOSAMPLE
ASSAY

2987 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
FAIRE-seq
pCHi-C
tissue
adipose tissue38112
islet of Langerhans2662013861
liver1478821
bone tissue58
body of pancreas2294422
cell line
HepG2535211
smooth muscle cell of the coronary artery5268
GM1287859
EndoC_BH13391
Panc1101
primary cell
monocyte534415
pancreatic beta cell109712
pancreatic alpha cell109612
pancreatic acinar cell44512
pancreatic ductal cell46410
in vitro differentiated cells
cardiomyocytes593
adipocyte4411
neural progenitor cell71310
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm412
stem cell
hESC2
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