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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1282total RNA-seq
  • 1093ChIP-seq
  • 209DNase-seq
  • 175ATAC-seq
  • 106single cell RNA-seq
  • 18WGBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 1406Transcription
  • 1093DNA binding
  • 389DNA accessibility
  • 18DNA methylation
Target of assay
  • 785histone modification
  • 784histone
  • transcription factor
  • 405narrow histone mark
  • 378broad histone mark
  • 306control
  • 103RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 567February, 2021
  • 283May, 2020
  • 273May, 2021
  • 243October, 2019
  • 235August, 2017
  • 214June, 2019
  • 164July, 2018
  • 149November, 2017
  • 115May, 2019
  • 82July, 2019
  • 73April, 2019
  • 72September, 2018
  • 61October, 2018
  • 58November, 2019
  • 52December, 2017
  • 49April, 2018
  • 49August, 2021
  • 39February, 2018
  • 24May, 2022
  • 23November, 2018
  • 16January, 2019
  • 16March, 2020
  • 15October, 2017
  • 11September, 2017
  • 6December, 2018
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 2907bam
  • 2673bigWig
  • 1600tsv
  • 1348bed narrowPeak
  • 904fastq
  • 637bigBed narrowPeak
  • 389tagAlign
  • 273bed broadPeak
  • 254bed bed3+
  • 236bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
  • 1vcf
Organism
  • 2900Homo sapiens
Biosample type
  • 1818tissue
  • 599primary cell
  • 254in vitro differentiated cells
  • 233cell line
  • 3stem cell
Organ
  • 670pancreas
  • 553connective tissue
  • 425adipose tissue
  • 355liver
  • 308epithelium
  • 240brain
  • 199heart
  • 176vasculature
  • 172blood vessel
  • 134kidney
  • 114limb
  • 97artery
  • 66bone element
  • 57musculature of body
  • 42nerve
  • 33embryo
  • 20vein
  • 18spleen
  • 18ureter
  • 9blood
  • 9bodily fluid
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2721AMP
  • 186T1D
Genome assembly (visualization)
  • 2522hg19
  • 2516GRCh38
Lab
  • 2702AMP-T2D consortium
  • 204Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 198inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 53missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
target.investigated_as!
  • transcription factor
BIOSAMPLE
ASSAY

2907 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
FAIRE-seq
pCHi-C
tissue
adipose tissue38122
islet of Langerhans2662313861
liver1478521
bone tissue58
tibial nerve43521
primary cell
monocyte538415
pancreatic beta cell1013712
pancreatic alpha cell1013612
pancreatic ductal cell413410
pancreatic acinar cell48512
in vitro differentiated cells
cardiomyocytes59
neural progenitor cell72010
adipocyte4311
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm415
cell line
HepG257411
smooth muscle cell of the coronary artery5228
EndoC_BH133141
Panc1131
GM128789
stem cell
hESC3
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