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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 378ChIP-seq
Assay category
  • 378DNA binding
Target of assay
  • 785histone modification
  • 784histone
  • 485transcription factor
  • 405narrow histone mark
  • 378broad histone mark
  • 306control
  • 103RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 58May, 2019
  • 55October, 2019
  • 49August, 2017
  • 46November, 2017
  • 44May, 2021
  • 37April, 2019
  • 19October, 2018
  • 17September, 2018
  • 15December, 2017
  • 8February, 2018
  • 8June, 2019
  • 7August, 2021
  • 6November, 2019
  • 5October, 2017
  • 4January, 2019
Available data
  • 427bigWig
  • 420bed narrowPeak
  • 378bam
  • 242bigBed narrowPeak
  • 147tagAlign
  • 118fastq
  • 36bed broadPeak
  • 16bigBed broadPeak
  • 12bed bed3+
Organism
  • 374Homo sapiens
Biosample type
  • 222tissue
  • 100primary cell
  • 37in vitro differentiated cells
  • 18cell line
  • 1stem cell
Organ
  • 70pancreas
  • 61brain
  • 45blood vessel
  • 45vasculature
  • 44epithelium
  • 37heart
  • 34limb
  • 29liver
  • 16connective tissue
  • 16nerve
  • 15kidney
  • 14artery
  • 9vein
  • 8musculature of body
  • 4embryo
  • 4spleen
Project
  • 334AMP
  • 44T1D
Genome assembly (visualization)
  • 372GRCh38
  • 338hg19
Lab
  • 334AMP-T2D consortium
  • 44Kyle Gaulton, UCSD
Audit category:
  • 14inconsistent ontology term
Audit category:
  • 24missing controlled_by
Audit category:
  • 15inconsistent control read length
  • 2inconsistent assembly
BIOSAMPLE
ASSAY

378 results

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Clear Filters
ChIP-seq
tissue
tibial nerve16
heart left ventricle15
tibial artery14
body of pancreas11
kidney10
primary cell
monocyte44
pancreatic endocrine cell11
endothelial cell of umbilical vein9
pancreatic ductal cell6
skeletal muscle myoblast6
in vitro differentiated cells
adipocyte12
hepatocyte7
neural progenitor cell6
pancreatic endoderm4
definitive endodermal cell2
cell line
HepG28
EndoC_BH16
Panc14
stem cell
hESC1
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