Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 784ChIP-seq
Assay category
  • 784DNA binding
Target of assay
  • 785histone modification
  • 784histone
  • 485transcription factor
  • 405narrow histone mark
  • 378broad histone mark
  • 306control
  • 103RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 173October, 2019
  • 102August, 2017
  • 92May, 2019
  • 86May, 2021
  • 75November, 2017
  • 59April, 2019
  • 32September, 2018
  • 31December, 2017
  • 30October, 2018
  • 27May, 2020
  • 19June, 2019
  • 16August, 2021
  • 16February, 2018
  • 10November, 2019
  • 7January, 2019
  • 6October, 2017
  • 3March, 2020
Available data
  • 868bigWig
  • 850bed narrowPeak
  • 784bam
  • 391bigBed narrowPeak
  • 321tagAlign
  • 229fastq
  • 65bed broadPeak
  • 30bigBed broadPeak
  • 25bed bed3+
  • 1tagAlign bed3+
Organism
  • 778Homo sapiens
Biosample type
  • 465tissue
  • 203primary cell
  • 79in vitro differentiated cells
  • 35cell line
  • 2stem cell
Organ
  • 166brain
  • 137pancreas
  • 93epithelium
  • 79liver
  • 71vasculature
  • 70blood vessel
  • 61heart
  • 48limb
  • 34connective tissue
  • 30kidney
  • 24nerve
  • 20artery
  • 15vein
  • 14musculature of body
  • 12embryo
  • 6spleen
  • 1adipose tissue
  • 1blood
  • 1bodily fluid
  • 1eye
  • 1pituitary gland
Project
  • 696AMP
  • 88T1D
Genome assembly (visualization)
  • 766GRCh38
  • 726hg19
Lab
  • 700AMP-T2D consortium
  • 84Kyle Gaulton, UCSD
Audit category:
  • 33inconsistent ontology term
Audit category:
  • 53missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

784 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
tissue
liver44
tibial nerve24
heart left ventricle23
kidney20
tibial artery18
primary cell
monocyte84
pancreatic endocrine cell23
endothelial cell of umbilical vein15
pancreatic ductal cell13
skeletal muscle myoblast12
in vitro differentiated cells
adipocyte25
neural progenitor cell13
hepatocyte12
pancreatic endoderm10
definitive endodermal cell4
cell line
HepG215
EndoC_BH112
Panc17
GM128781
stem cell
hESC2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego