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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 405ChIP-seq
Assay category
  • 405DNA binding
Target of assay
  • 785histone modification
  • 784histone
  • 485transcription factor
  • 405narrow histone mark
  • 378broad histone mark
  • 306control
  • 103RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 118October, 2019
  • 52August, 2017
  • 42May, 2021
  • 34May, 2019
  • 29November, 2017
  • 27May, 2020
  • 22April, 2019
  • 16December, 2017
  • 15September, 2018
  • 11June, 2019
  • 11October, 2018
  • 9August, 2021
  • 8February, 2018
  • 4November, 2019
  • 3January, 2019
  • 3March, 2020
  • 1October, 2017
Available data
  • 440bigWig
  • 429bed narrowPeak
  • 405bam
  • 174tagAlign
  • 149bigBed narrowPeak
  • 110fastq
  • 29bed broadPeak
  • 14bigBed broadPeak
  • 13bed bed3+
  • 1tagAlign bed3+
Organism
  • 403Homo sapiens
Biosample type
  • 243tissue
  • 103primary cell
  • 41in vitro differentiated cells
  • 17cell line
  • 1stem cell
Organ
  • 105brain
  • 67pancreas
  • 50liver
  • 49epithelium
  • 26vasculature
  • 25blood vessel
  • 24heart
  • 17connective tissue
  • 15kidney
  • 14limb
  • 8embryo
  • 8nerve
  • 6artery
  • 6musculature of body
  • 6vein
  • 2spleen
  • 1adipose tissue
  • 1blood
  • 1bodily fluid
  • 1eye
  • 1pituitary gland
Project
  • 361AMP
  • 44T1D
Genome assembly (visualization)
  • 393GRCh38
  • 387hg19
Lab
  • 365AMP-T2D consortium
  • 40Kyle Gaulton, UCSD
Audit category:
  • 19inconsistent ontology term
Audit category:
  • 29missing controlled_by
Audit category:
  • 16inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

405 results

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Clear Filters
ChIP-seq
tissue
liver34
islet of Langerhans10
kidney10
heart left ventricle8
tibial nerve8
primary cell
monocyte40
pancreatic endocrine cell12
pancreatic ductal cell7
endothelial cell of umbilical vein6
skeletal muscle myoblast6
in vitro differentiated cells
adipocyte12
neural progenitor cell7
pancreatic endoderm6
hepatocyte5
Hepatic endoderm2
cell line
HepG27
EndoC_BH16
Panc13
GM128781
stem cell
hESC1
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