Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
Hi-C
2
total RNA-seq
1
pCHi-C
1
snATAC-seq
Assay category
5
3D chromatin structure
2
Transcription
1
DNA accessibility
Date released
February, 2023
4
July, 2019
2
May, 2021
1
February, 2021
1
May, 2022
1
October, 2019
Available data
bam
3149
bigWig
1737
bed narrowPeak
1584
tsv
1282
fastq
1029
bigBed narrowPeak
398
tagAlign
318
bed broadPeak
281
bigBed broadPeak
265
bed bed3+
154
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
22
bedpe bed3+
21
hic
8
csv
5
hdf5
4
bed bedgraph
3
cool
3
tar
2
bed bed3
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
9
Homo sapiens
Biosample type
6
primary cell
2
cell line
1
tissue
Organ
3
brain
2
blood vessel
2
epithelium
2
liver
2
vasculature
1
connective tissue
1
musculature of body
1
pancreas
Project
9
AMP
Genome assembly (visualization)
9
hg19
1
GRCh38
Lab
7
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Struan F.A. Grant, CHOP
Audit category:
1
audit script error
Audit category:
1
inconsistent assembly
files.file_type!
bam
lab.title!
Struan F.A. Grant, CHOP
month_released!
February, 2023
organ_slims!
vein
BIOSAMPLE
ASSAY
9 results
search-icon
table-tab-icon
Clear Filters
Hi-C
total RNA-seq
pCHi-C
snATAC-seq
primary cell
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
HepG2
1
Panc1
1
tissue
skeletal muscle tissue
1
Download