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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ChIP-seq
4
ATAC-seq
2
Capture-C
2
total RNA-seq
1
pCHi-C
1
snATAC-seq
Assay category
45
DNA binding
5
DNA accessibility
2
Transcription
Target of assay
22
histone
22
histone modification
17
transcription factor
11
broad histone mark
11
narrow histone mark
8
control
RNA binding protein
Date released
28
August, 2017
15
December, 2017
4
February, 2023
2
August, 2021
2
May, 2021
2
September, 2017
1
February, 2021
1
May, 2022
Available data
2665
bam
2497
bigWig
1426
tsv
1327
bed narrowPeak
861
fastq
646
bigBed narrowPeak
312
tagAlign
258
bed bed3+
bed broadPeak
217
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
7
bed bedgraph
7
csv
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
55
Homo sapiens
Biosample type
25
in vitro differentiated cells
24
tissue
3
primary cell
3
stem cell
Organ
19
pancreas
18
connective tissue
liver
4
adipose tissue
3
embryo
3
epithelium
1
musculature of body
Project
55
AMP
Genome assembly (visualization)
55
hg19
45
GRCh38
Lab
51
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
13
missing controlled_by
Audit category:
10
inconsistent control read length
files.file_type!
bed broadPeak
hdf5
organ_slims!
liver
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
55 results
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ChIP-seq
ATAC-seq
Capture-C
total RNA-seq
pCHi-C
snATAC-seq
in vitro differentiated cells
adipocyte
7
1
1
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
+ See 3 more…
tissue
islet of Langerhans
19
white adipose tissue
4
skeletal muscle tissue
1
primary cell
CD8-positive, alpha-beta T cell
2
osteoblast
1
stem cell
hESC
3
See all biosamples
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