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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ChIP-seq
3
Hi-C
Assay category
11
DNA binding
3
3D chromatin structure
Target of assay
6
transcription factor
3
histone
3
histone modification
2
control
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
9
August, 2017
2
July, 2019
2
September, 2017
1
October, 2019
Available data
869
bam
773
bigWig
485
tsv
474
fastq
bed narrowPeak
170
bigBed narrowPeak
80
zippedFastqFolder
40
bed bed3+
34
bed broadPeak
25
tagAlign
20
bigBed broadPeak
10
hic
9
bedpe bed3+
7
bed bedMethyl
7
bigBed bedMethyl
6
txt
3
cool
3
hdf5
1
bedpe
1
tar
Organism
14
Homo sapiens
Biosample type
11
tissue
2
primary cell
1
cell line
Organ
13
connective tissue
12
pancreas
4
adipose tissue
3
brain
3
liver
2
blood vessel
2
epithelium
2
vasculature
1
embryo
1
musculature of body
Project
14
AMP
Genome assembly (visualization)
14
hg19
12
GRCh38
Lab
14
AMP-T2D consortium
Audit category:
9
missing controlled_by
Audit category:
1
inconsistent assembly
files.file_type!
bed narrowPeak
organ_slims!
adrenal gland
BIOSAMPLE
ASSAY
14 results
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Clear Filters
ChIP-seq
Hi-C
tissue
islet of Langerhans
11
primary cell
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
cell line
Panc1
1
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