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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 22ChIP-seq
  • 5Hi-C
  • 4ATAC-seq
  • 2Capture-C
  • 2pCHi-C
  • 2total RNA-seq
  • 1snATAC-seq
Assay category
  • 22DNA binding
  • 53D chromatin structure
  • 5DNA accessibility
  • 2Transcription
Target of assay
  • 10transcription factor
  • 9control
  • 3histone
  • 3histone modification
  • 2narrow histone mark
  • 1RNA binding protein
  • 1broad histone mark
Date released
  • 15August, 2017
  • 5December, 2017
  • 4February, 2023
  • 4July, 2019
  • 2August, 2021
  • 2February, 2021
  • 2May, 2021
  • 2September, 2017
  • 1May, 2022
  • 1October, 2019
Available data
  • 3392bam
  • 3169bigWig
  • bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 38Homo sapiens
Biosample type
  • 17tissue
  • 11in vitro differentiated cells
  • 7primary cell
  • 2cell line
  • 1stem cell
Organ
  • 13connective tissue
  • 12pancreas
  • 4adipose tissue
  • 3brain
  • 3liver
  • 2blood vessel
  • 2epithelium
  • 2vasculature
  • 1embryo
  • 1musculature of body
Project
  • 38AMP
Genome assembly (visualization)
  • 38hg19
  • 23GRCh38
Lab
  • 34AMP-T2D consortium
  • 2Kyle Gaulton, UCSD
  • 2Struan F.A. Grant, CHOP
Audit category:
  • 2inconsistent ontology term
  • 1audit script error
Audit category:
  • 13missing controlled_by
Audit category:
  • 1inconsistent assembly
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

38 results

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Clear Filters
ChIP-seq
Hi-C
ATAC-seq
Capture-C
pCHi-C
total RNA-seq
snATAC-seq
tissue
islet of Langerhans11
white adipose tissue4
liver1
skeletal muscle tissue1
in vitro differentiated cells
adipocyte111
immature adipocyte2
Posterior foregut1
definitive endodermal cell1
osteoblast1
primary cell
CD8-positive, alpha-beta T cell2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
brain pericyte1
endothelial cell of hepatic sinusoid1
cell line
HepG21
Panc11
stem cell
hESC1
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