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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
9
DNase-seq
1
Hi-C
Assay category
25
DNA binding
9
DNA accessibility
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
11
transcription factor
6
broad histone mark
6
narrow histone mark
2
RNA binding protein
2
control
Date released
23
August, 2017
5
June, 2019
3
November, 2018
2
October, 2019
2
September, 2017
Available data
1131
bam
1048
bigWig
818
tsv
515
fastq
227
bed narrowPeak
101
bigBed narrowPeak
80
zippedFastqFolder
35
bed bed3+
27
tagAlign
24
bed broadPeak
9
bigBed broadPeak
8
bed bedMethyl
bedpe bed3+
8
bigBed bedMethyl
7
hic
6
txt
3
cool
1
bedpe
1
hdf5
Organism
35
Homo sapiens
Biosample type
33
tissue
2
cell line
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
27
connective tissue
21
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
35
AMP
Genome assembly (visualization)
35
GRCh38
33
hg19
Lab
35
AMP-T2D consortium
Audit category:
14
missing controlled_by
Audit category:
1
inconsistent assembly
files.file_type!
bedpe bed3+
month_released!
February, 2018
BIOSAMPLE
ASSAY
35 results
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Clear Filters
ChIP-seq
DNase-seq
Hi-C
tissue
islet of Langerhans
21
body of pancreas
4
white adipose tissue
4
omental fat pad
2
pancreas
2
cell line
Panc1
1
1
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