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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
DNase-seq
2
Hi-C
Assay category
16
DNA accessibility
2
3D chromatin structure
Target of assay
3
histone
histone modification
2
narrow histone mark
1
broad histone mark
Date released
14
June, 2019
2
July, 2019
2
October, 2019
Available data
200
fastq
198
bam
185
bigWig
124
tsv
80
zippedFastqFolder
63
bed narrowPeak
47
bigBed narrowPeak
18
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
bedpe bed3+
3
cool
3
tagAlign
2
hdf5
1
tar
Organism
18
Homo sapiens
Biosample type
18
primary cell
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
26
connective tissue
18
epithelium
18
ureter
17
pancreas
13
vasculature
11
blood vessel
9
liver
6
adipose tissue
4
artery
4
eye
2
nerve
2
vein
1
embryo
1
spleen
Project
18
AMP
Genome assembly (visualization)
16
GRCh38
12
hg19
Lab
18
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bedpe bed3+
month_released!
February, 2021
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
18 results
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DNase-seq
Hi-C
primary cell
brain microvascular endothelial cell
1
1
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
choroid plexus epithelial cell
1
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